Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CNTN3Q9P232 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CNTN3Q9P232 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.42■□□□□ 0.54
CNTN3Q9P232 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CNTN3Q9P232 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CNTN3Q9P232 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.41■□□□□ 0.54
CNTN3Q9P232 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CNTN3Q9P232 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.41■□□□□ 0.54
CNTN3Q9P232 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CNTN3Q9P232 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.41■□□□□ 0.54
CNTN3Q9P232 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CNTN3Q9P232 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CNTN3Q9P232 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CNTN3Q9P232 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CNTN3Q9P232 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.41■□□□□ 0.54
CNTN3Q9P232 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.41■□□□□ 0.54
CNTN3Q9P232 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.41■□□□□ 0.54
CNTN3Q9P232 MIR3687-2-201ENST00000577708 61 ntBASIC18.41■□□□□ 0.54
CNTN3Q9P232 MIR3687-1-201ENST00000614492 61 ntBASIC18.41■□□□□ 0.54
CNTN3Q9P232 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.41■□□□□ 0.54
CNTN3Q9P232 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CNTN3Q9P232 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
CNTN3Q9P232 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.41■□□□□ 0.54
CNTN3Q9P232 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CNTN3Q9P232 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CNTN3Q9P232 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CNTN3Q9P232 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CNTN3Q9P232 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CNTN3Q9P232 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.41■□□□□ 0.54
CNTN3Q9P232 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CNTN3Q9P232 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CNTN3Q9P232 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CNTN3Q9P232 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CNTN3Q9P232 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CNTN3Q9P232 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CNTN3Q9P232 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CNTN3Q9P232 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 DUX4L17-201ENST00000557360 1267 ntBASIC18.4■□□□□ 0.54
CNTN3Q9P232 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CNTN3Q9P232 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CNTN3Q9P232 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CNTN3Q9P232 AL645608.8-201ENST00000606034 2086 ntBASIC18.4■□□□□ 0.54
CNTN3Q9P232 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CNTN3Q9P232 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CNTN3Q9P232 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.54
CNTN3Q9P232 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CNTN3Q9P232 FRMD8P1-201ENST00000440433 1524 ntBASIC18.39■□□□□ 0.54
CNTN3Q9P232 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.39■□□□□ 0.54
CNTN3Q9P232 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CNTN3Q9P232 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CNTN3Q9P232 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.39■□□□□ 0.53
CNTN3Q9P232 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CNTN3Q9P232 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.39■□□□□ 0.53
CNTN3Q9P232 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CNTN3Q9P232 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CNTN3Q9P232 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.39■□□□□ 0.53
CNTN3Q9P232 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.39■□□□□ 0.53
CNTN3Q9P232 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.39■□□□□ 0.53
CNTN3Q9P232 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.39■□□□□ 0.53
CNTN3Q9P232 AC055717.3-201ENST00000622967 595 ntBASIC18.39■□□□□ 0.53
CNTN3Q9P232 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CNTN3Q9P232 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.39■□□□□ 0.53
CNTN3Q9P232 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.39■□□□□ 0.53
CNTN3Q9P232 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CNTN3Q9P232 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.39■□□□□ 0.53
CNTN3Q9P232 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CNTN3Q9P232 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CNTN3Q9P232 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CNTN3Q9P232 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CNTN3Q9P232 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms