Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDX2Q99626 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDX2Q99626 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.71■□□□□ 0.43
CDX2Q99626 MIR1247-201ENST00000408206 136 ntBASIC17.71■□□□□ 0.43
CDX2Q99626 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.71■□□□□ 0.43
CDX2Q99626 GPAA1P2-201ENST00000417923 928 ntBASIC17.71■□□□□ 0.43
CDX2Q99626 RNA5SP412-201ENST00000516234 123 ntBASIC17.71■□□□□ 0.43
CDX2Q99626 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.71■□□□□ 0.43
CDX2Q99626 BANF1P1-201ENST00000553684 263 ntBASIC17.71■□□□□ 0.43
CDX2Q99626 AL512361.1-201ENST00000554200 418 ntBASIC17.71■□□□□ 0.43
CDX2Q99626 AC023310.3-201ENST00000557027 670 ntBASIC17.71■□□□□ 0.43
CDX2Q99626 EMC4-209ENST00000559421 497 ntTSL 2 BASIC17.71■□□□□ 0.43
CDX2Q99626 AC100756.1-201ENST00000562736 682 ntBASIC17.71■□□□□ 0.43
CDX2Q99626 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.71■□□□□ 0.43
CDX2Q99626 AC138749.3-201ENST00000567691 622 ntBASIC17.71■□□□□ 0.43
CDX2Q99626 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.71■□□□□ 0.43
CDX2Q99626 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.71■□□□□ 0.43
CDX2Q99626 AC243960.2-201ENST00000600996 747 ntBASIC17.71■□□□□ 0.43
CDX2Q99626 AC106872.11-201ENST00000605838 421 ntBASIC17.71■□□□□ 0.43
CDX2Q99626 AC116165.1-201ENST00000611806 668 ntBASIC17.71■□□□□ 0.43
CDX2Q99626 SNX1-214ENST00000625244 324 ntTSL 5 BASIC17.71■□□□□ 0.43
CDX2Q99626 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC17.71■□□□□ 0.43
CDX2Q99626 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.71■□□□□ 0.43
CDX2Q99626 AL033527.5-201ENST00000641382 801 ntBASIC17.71■□□□□ 0.43
CDX2Q99626 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDX2Q99626 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.71■□□□□ 0.43
CDX2Q99626 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDX2Q99626 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDX2Q99626 FOXO1B-201ENST00000504678 1527 ntBASIC17.71■□□□□ 0.43
CDX2Q99626 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.71■□□□□ 0.43
CDX2Q99626 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDX2Q99626 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CDX2Q99626 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CDX2Q99626 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CDX2Q99626 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CDX2Q99626 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CDX2Q99626 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
CDX2Q99626 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.7■□□□□ 0.42
CDX2Q99626 AL096828.2-201ENST00000567259 1965 ntBASIC17.7■□□□□ 0.42
CDX2Q99626 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDX2Q99626 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDX2Q99626 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDX2Q99626 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
CDX2Q99626 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CDX2Q99626 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC17.7■□□□□ 0.42
CDX2Q99626 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDX2Q99626 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CDX2Q99626 AC005229.1-201ENST00000392885 409 ntBASIC17.7■□□□□ 0.42
CDX2Q99626 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDX2Q99626 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.7■□□□□ 0.42
CDX2Q99626 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.7■□□□□ 0.42
CDX2Q99626 PFN1P12-201ENST00000455938 534 ntBASIC17.7■□□□□ 0.42
CDX2Q99626 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.7■□□□□ 0.42
CDX2Q99626 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.7■□□□□ 0.42
CDX2Q99626 AC126763.1-201ENST00000552015 2118 ntBASIC17.7■□□□□ 0.42
CDX2Q99626 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC17.7■□□□□ 0.42
CDX2Q99626 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.7■□□□□ 0.42
CDX2Q99626 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.7■□□□□ 0.42
CDX2Q99626 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.7■□□□□ 0.42
CDX2Q99626 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC17.7■□□□□ 0.42
CDX2Q99626 PDIA3P1-201ENST00000471856 1510 ntBASIC17.7■□□□□ 0.42
CDX2Q99626 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDX2Q99626 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.7■□□□□ 0.42
CDX2Q99626 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.7■□□□□ 0.42
CDX2Q99626 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.7■□□□□ 0.42
CDX2Q99626 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDX2Q99626 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX2Q99626 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX2Q99626 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX2Q99626 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CDX2Q99626 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX2Q99626 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDX2Q99626 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX2Q99626 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.69■□□□□ 0.42
CDX2Q99626 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX2Q99626 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
CDX2Q99626 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX2Q99626 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDX2Q99626 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDX2Q99626 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
CDX2Q99626 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.69■□□□□ 0.42
CDX2Q99626 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.69■□□□□ 0.42
CDX2Q99626 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.69■□□□□ 0.42
CDX2Q99626 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CDX2Q99626 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CDX2Q99626 AC093726.1-201ENST00000608064 963 ntBASIC17.69■□□□□ 0.42
CDX2Q99626 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CDX2Q99626 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX2Q99626 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX2Q99626 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.69■□□□□ 0.42
CDX2Q99626 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
CDX2Q99626 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.69■□□□□ 0.42
CDX2Q99626 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDX2Q99626 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CDX2Q99626 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDX2Q99626 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.68■□□□□ 0.42
CDX2Q99626 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDX2Q99626 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDX2Q99626 AC018665.1-201ENST00000622927 1362 ntBASIC17.68■□□□□ 0.42
CDX2Q99626 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms