Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.65■□□□□ 0.74
USP28Q96RU2 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.65■□□□□ 0.74
USP28Q96RU2 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.65■□□□□ 0.74
USP28Q96RU2 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.65■□□□□ 0.74
USP28Q96RU2 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.65■□□□□ 0.74
USP28Q96RU2 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP28Q96RU2 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP28Q96RU2 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.65■□□□□ 0.74
USP28Q96RU2 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USP28Q96RU2 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.64■□□□□ 0.74
USP28Q96RU2 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
USP28Q96RU2 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.64■□□□□ 0.74
USP28Q96RU2 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.64■□□□□ 0.74
USP28Q96RU2 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
USP28Q96RU2 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.64■□□□□ 0.74
USP28Q96RU2 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP28Q96RU2 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
USP28Q96RU2 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP28Q96RU2 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
USP28Q96RU2 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP28Q96RU2 POM121L3P-201ENST00000419331 1163 ntBASIC19.64■□□□□ 0.73
USP28Q96RU2 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP28Q96RU2 SIGLEC30P-201ENST00000455569 941 ntBASIC19.64■□□□□ 0.73
USP28Q96RU2 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.64■□□□□ 0.73
USP28Q96RU2 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP28Q96RU2 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.64■□□□□ 0.73
USP28Q96RU2 DUX4L17-201ENST00000557360 1267 ntBASIC19.64■□□□□ 0.73
USP28Q96RU2 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
USP28Q96RU2 AC092119.3-201ENST00000612618 583 ntBASIC19.64■□□□□ 0.73
USP28Q96RU2 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.64■□□□□ 0.73
USP28Q96RU2 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC19.64■□□□□ 0.73
USP28Q96RU2 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP28Q96RU2 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP28Q96RU2 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP28Q96RU2 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.64■□□□□ 0.73
USP28Q96RU2 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP28Q96RU2 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.64■□□□□ 0.73
USP28Q96RU2 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP28Q96RU2 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
USP28Q96RU2 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
USP28Q96RU2 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.64■□□□□ 0.73
USP28Q96RU2 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.64■□□□□ 0.73
USP28Q96RU2 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
USP28Q96RU2 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP28Q96RU2 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP28Q96RU2 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP28Q96RU2 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.63■□□□□ 0.73
USP28Q96RU2 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
USP28Q96RU2 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.63■□□□□ 0.73
USP28Q96RU2 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 AC012615.1-201ENST00000565797 1299 ntBASIC19.63■□□□□ 0.73
USP28Q96RU2 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.63■□□□□ 0.73
USP28Q96RU2 AC099336.1-202ENST00000602961 463 ntBASIC19.63■□□□□ 0.73
USP28Q96RU2 AC069148.1-201ENST00000608741 768 ntBASIC19.63■□□□□ 0.73
USP28Q96RU2 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.63■□□□□ 0.73
USP28Q96RU2 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC19.63■□□□□ 0.73
USP28Q96RU2 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.63■□□□□ 0.73
USP28Q96RU2 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.63■□□□□ 0.73
USP28Q96RU2 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.63■□□□□ 0.73
USP28Q96RU2 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
USP28Q96RU2 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP28Q96RU2 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
USP28Q96RU2 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 PCDH8P1-201ENST00000428983 2773 ntBASIC19.62■□□□□ 0.73
USP28Q96RU2 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.62■□□□□ 0.73
USP28Q96RU2 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.62■□□□□ 0.73
USP28Q96RU2 SIGLEC16-201ENST00000599858 1437 ntBASIC19.62■□□□□ 0.73
USP28Q96RU2 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
USP28Q96RU2 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.62■□□□□ 0.73
USP28Q96RU2 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP28Q96RU2 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
USP28Q96RU2 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
USP28Q96RU2 ACTG1P4-201ENST00000425123 1122 ntBASIC19.62■□□□□ 0.73
USP28Q96RU2 ATP5G2P1-201ENST00000433580 426 ntBASIC19.62■□□□□ 0.73
USP28Q96RU2 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.62■□□□□ 0.73
USP28Q96RU2 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms