Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 FAM185BP-201ENST00000443595 716 ntBASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 AC096734.2-201ENST00000562054 433 ntBASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 AC092053.1-201ENST00000605787 1936 ntBASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
ECHDC3Q96DC8 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 RHOQP3-201ENST00000437982 621 ntBASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 ACTL9-202ENST00000612068 1252 ntBASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 AC010507.1-201ENST00000633895 436 ntBASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 PMS2P7-201ENST00000506558 1336 ntBASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ECHDC3Q96DC8 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 MIR940-201ENST00000401276 94 ntBASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 CXCL1P1-201ENST00000502804 216 ntBASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.11■□□□□ 0.33
ECHDC3Q96DC8 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ECHDC3Q96DC8 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ECHDC3Q96DC8 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
ECHDC3Q96DC8 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ECHDC3Q96DC8 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.1■□□□□ 0.33
ECHDC3Q96DC8 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.1■□□□□ 0.33
ECHDC3Q96DC8 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms