Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 AL031133.1-201ENST00000406807 723 ntBASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PPP4R4Q6NUP7 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 AC103702.1-201ENST00000548801 2630 ntBASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 AL136038.4-201ENST00000603606 1261 ntBASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 AL358472.4-201ENST00000633140 710 ntBASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PPP4R4Q6NUP7 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PPP4R4Q6NUP7 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.52■□□□□ 0.23
PPP4R4Q6NUP7 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PPP4R4Q6NUP7 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
PPP4R4Q6NUP7 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PPP4R4Q6NUP7 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
PPP4R4Q6NUP7 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PPP4R4Q6NUP7 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PPP4R4Q6NUP7 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.52■□□□□ 0.23
PPP4R4Q6NUP7 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.52■□□□□ 0.23
PPP4R4Q6NUP7 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
PPP4R4Q6NUP7 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PPP4R4Q6NUP7 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PPP4R4Q6NUP7 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 CYP2T1P-202ENST00000641596 2535 ntBASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 ZNF444P1-201ENST00000559497 298 ntBASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 AC116407.2-201ENST00000613639 860 ntBASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 AC093458.2-201ENST00000623150 629 ntBASIC16.51■□□□□ 0.23
PPP4R4Q6NUP7 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms