Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 LINC00602-201ENST00000629776 2065 ntBASIC16.53■□□□□ 0.24
COL28A1Q2UY09 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 TNRC18P3-201ENST00000441896 2691 ntBASIC16.52■□□□□ 0.24
COL28A1Q2UY09 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 PRYP5-201ENST00000451909 266 ntBASIC16.52■□□□□ 0.24
COL28A1Q2UY09 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 AC073592.4-201ENST00000623827 446 ntBASIC16.52■□□□□ 0.24
COL28A1Q2UY09 AC010507.1-201ENST00000633895 436 ntBASIC16.52■□□□□ 0.24
COL28A1Q2UY09 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL28A1Q2UY09 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL28A1Q2UY09 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL28A1Q2UY09 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL28A1Q2UY09 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL28A1Q2UY09 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL28A1Q2UY09 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL28A1Q2UY09 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL28A1Q2UY09 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL28A1Q2UY09 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL28A1Q2UY09 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.52■□□□□ 0.23
COL28A1Q2UY09 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 AC074386.1-202ENST00000463561 864 ntBASIC16.51■□□□□ 0.23
COL28A1Q2UY09 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 IGHV3-65-201ENST00000523210 341 ntBASIC16.51■□□□□ 0.23
COL28A1Q2UY09 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 AL589182.2-201ENST00000619332 1049 ntBASIC16.51■□□□□ 0.23
COL28A1Q2UY09 AC004706.3-202ENST00000621574 984 ntBASIC16.51■□□□□ 0.23
COL28A1Q2UY09 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 PMPCAP1-201ENST00000508114 1576 ntBASIC16.51■□□□□ 0.23
COL28A1Q2UY09 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL28A1Q2UY09 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms