Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC005412.3-201ENST00000580309 715 ntBASIC19.06■□□□□ 0.64
HTTP42858 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC19.06■□□□□ 0.64
HTTP42858 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.06■□□□□ 0.64
HTTP42858 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.06■□□□□ 0.64
HTTP42858 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HTTP42858 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HTTP42858 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
HTTP42858 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HTTP42858 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC19.06■□□□□ 0.64
HTTP42858 RPL28-206ENST00000558752 671 ntTSL 3 BASIC19.06■□□□□ 0.64
HTTP42858 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
HTTP42858 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HTTP42858 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HTTP42858 RPL37AP1-201ENST00000412502 279 ntBASIC19.05■□□□□ 0.64
HTTP42858 CD74-212ENST00000524315 584 ntTSL 5 BASIC19.05■□□□□ 0.64
HTTP42858 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC19.05■□□□□ 0.64
HTTP42858 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HTTP42858 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC19.05■□□□□ 0.64
HTTP42858 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC19.05■□□□□ 0.64
HTTP42858 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC19.05■□□□□ 0.64
HTTP42858 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.05■□□□□ 0.64
HTTP42858 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HTTP42858 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.05■□□□□ 0.64
HTTP42858 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC19.05■□□□□ 0.64
HTTP42858 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC19.05■□□□□ 0.64
HTTP42858 RPSAP52-203ENST00000622976 1023 ntBASIC19.05■□□□□ 0.64
HTTP42858 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HTTP42858 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
HTTP42858 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HTTP42858 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
HTTP42858 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HTTP42858 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HTTP42858 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
HTTP42858 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC19.05■□□□□ 0.64
HTTP42858 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
HTTP42858 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC19.05■□□□□ 0.64
HTTP42858 MFF-223ENST00000524634 647 ntTSL 2 BASIC19.05■□□□□ 0.64
HTTP42858 AL583810.1-201ENST00000553344 1045 ntBASIC19.05■□□□□ 0.64
HTTP42858 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.04■□□□□ 0.64
HTTP42858 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HTTP42858 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HTTP42858 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HTTP42858 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC19.04■□□□□ 0.64
HTTP42858 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HTTP42858 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.04■□□□□ 0.64
HTTP42858 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HTTP42858 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC19.04■□□□□ 0.64
HTTP42858 SLC7A15P-201ENST00000424028 1363 ntBASIC19.04■□□□□ 0.64
HTTP42858 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HTTP42858 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HTTP42858 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.04■□□□□ 0.64
HTTP42858 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.04■□□□□ 0.64
HTTP42858 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HTTP42858 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
HTTP42858 ELK1P1-201ENST00000485699 580 ntBASIC19.04■□□□□ 0.64
HTTP42858 ZNF767P-206ENST00000513792 565 ntBASIC19.04■□□□□ 0.64
HTTP42858 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC19.04■□□□□ 0.64
HTTP42858 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC19.04■□□□□ 0.64
HTTP42858 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HTTP42858 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.04■□□□□ 0.64
HTTP42858 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
HTTP42858 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.04■□□□□ 0.64
HTTP42858 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HTTP42858 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HTTP42858 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.03■□□□□ 0.64
HTTP42858 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
HTTP42858 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
HTTP42858 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HTTP42858 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HTTP42858 CENPM-206ENST00000407253 818 ntTSL 2 BASIC19.03■□□□□ 0.64
HTTP42858 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC19.03■□□□□ 0.64
HTTP42858 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC19.03■□□□□ 0.64
HTTP42858 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC19.03■□□□□ 0.64
HTTP42858 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HTTP42858 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
HTTP42858 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
HTTP42858 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.03■□□□□ 0.64
HTTP42858 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HTTP42858 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
HTTP42858 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HTTP42858 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
HTTP42858 HLA-DPB2-205ENST00000435074 1188 ntBASIC19.03■□□□□ 0.64
HTTP42858 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC19.03■□□□□ 0.64
HTTP42858 AC105233.2-201ENST00000523697 349 ntBASIC19.03■□□□□ 0.64
HTTP42858 AF228730.5-201ENST00000530288 346 ntBASIC19.03■□□□□ 0.64
HTTP42858 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC19.03■□□□□ 0.64
HTTP42858 AC003101.2-201ENST00000612557 442 ntBASIC19.03■□□□□ 0.64
HTTP42858 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HTTP42858 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HTTP42858 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HTTP42858 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.03■□□□□ 0.64
HTTP42858 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.03■□□□□ 0.64
HTTP42858 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.03■□□□□ 0.64
HTTP42858 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HTTP42858 AL355994.2-201ENST00000447882 704 ntBASIC19.03■□□□□ 0.64
HTTP42858 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC19.03■□□□□ 0.64
HTTP42858 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC19.02■□□□□ 0.64
HTTP42858 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HTTP42858 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.02■□□□□ 0.64
HTTP42858 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms