Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD3P31249 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 AC027796.2-201ENST00000575326 344 ntBASIC13.32□□□□□ -0.28
HOXD3P31249 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD3P31249 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.32□□□□□ -0.28
HOXD3P31249 AL355385.1-201ENST00000606123 409 ntBASIC13.32□□□□□ -0.28
HOXD3P31249 AL596442.2-201ENST00000610240 980 ntBASIC13.32□□□□□ -0.28
HOXD3P31249 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.32□□□□□ -0.28
HOXD3P31249 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
HOXD3P31249 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC13.32□□□□□ -0.28
HOXD3P31249 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD3P31249 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
HOXD3P31249 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC13.32□□□□□ -0.28
HOXD3P31249 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD3P31249 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD3P31249 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 AL135999.2-201ENST00000622438 1686 ntBASIC13.31□□□□□ -0.28
HOXD3P31249 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXD3P31249 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
HOXD3P31249 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC13.31□□□□□ -0.28
HOXD3P31249 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXD3P31249 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD3P31249 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD3P31249 HNRNPA1P28-201ENST00000424481 961 ntBASIC13.31□□□□□ -0.28
HOXD3P31249 AC004832.2-201ENST00000426397 482 ntBASIC13.31□□□□□ -0.28
HOXD3P31249 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD3P31249 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC13.31□□□□□ -0.28
HOXD3P31249 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.31□□□□□ -0.28
HOXD3P31249 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC13.31□□□□□ -0.28
HOXD3P31249 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC13.31□□□□□ -0.28
HOXD3P31249 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD3P31249 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC13.31□□□□□ -0.28
HOXD3P31249 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXD3P31249 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC13.31□□□□□ -0.28
HOXD3P31249 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
HOXD3P31249 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
HOXD3P31249 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD3P31249 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXD3P31249 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXD3P31249 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD3P31249 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD3P31249 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD3P31249 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
HOXD3P31249 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXD3P31249 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXD3P31249 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
HOXD3P31249 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HOXD3P31249 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HOXD3P31249 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD3P31249 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD3P31249 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD3P31249 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC13.3□□□□□ -0.28
HOXD3P31249 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC13.3□□□□□ -0.28
HOXD3P31249 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD3P31249 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
HOXD3P31249 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
HOXD3P31249 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
HOXD3P31249 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD3P31249 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HOXD3P31249 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
HOXD3P31249 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC13.3□□□□□ -0.28
HOXD3P31249 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
HOXD3P31249 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
HOXD3P31249 AC211486.1-202ENST00000416371 468 ntBASIC13.3□□□□□ -0.28
HOXD3P31249 LINC00982-205ENST00000420957 435 ntBASIC13.3□□□□□ -0.28
HOXD3P31249 DNAJB3-202ENST00000449667 1266 ntBASIC13.3□□□□□ -0.28
HOXD3P31249 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.3□□□□□ -0.28
HOXD3P31249 AC211476.1-201ENST00000503899 468 ntBASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms