Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.81■□□□□ 0.6
COL6A1P12109 AL138828.2-201ENST00000615812 383 ntBASIC18.81■□□□□ 0.6
COL6A1P12109 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.81■□□□□ 0.6
COL6A1P12109 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A1P12109 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A1P12109 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A1P12109 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A1P12109 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A1P12109 TNXA-203ENST00000507684 2038 ntBASIC18.81■□□□□ 0.6
COL6A1P12109 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.81■□□□□ 0.6
COL6A1P12109 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
COL6A1P12109 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.81■□□□□ 0.6
COL6A1P12109 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
COL6A1P12109 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.81■□□□□ 0.6
COL6A1P12109 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A1P12109 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.8■□□□□ 0.6
COL6A1P12109 AC090164.3-201ENST00000610780 2143 ntBASIC18.8■□□□□ 0.6
COL6A1P12109 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A1P12109 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A1P12109 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A1P12109 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL6A1P12109 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.8■□□□□ 0.6
COL6A1P12109 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A1P12109 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
COL6A1P12109 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A1P12109 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.8■□□□□ 0.6
COL6A1P12109 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A1P12109 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
COL6A1P12109 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.8■□□□□ 0.6
COL6A1P12109 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC18.8■□□□□ 0.6
COL6A1P12109 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.8■□□□□ 0.6
COL6A1P12109 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.8■□□□□ 0.6
COL6A1P12109 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL6A1P12109 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A1P12109 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
COL6A1P12109 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.79■□□□□ 0.6
COL6A1P12109 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
COL6A1P12109 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.79■□□□□ 0.6
COL6A1P12109 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
COL6A1P12109 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.79■□□□□ 0.6
COL6A1P12109 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.79■□□□□ 0.6
COL6A1P12109 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
COL6A1P12109 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.79■□□□□ 0.6
COL6A1P12109 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.79■□□□□ 0.6
COL6A1P12109 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A1P12109 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A1P12109 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.78■□□□□ 0.6
COL6A1P12109 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A1P12109 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A1P12109 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A1P12109 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A1P12109 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A1P12109 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
COL6A1P12109 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A1P12109 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A1P12109 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A1P12109 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A1P12109 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.78■□□□□ 0.6
COL6A1P12109 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.78■□□□□ 0.6
COL6A1P12109 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.78■□□□□ 0.6
COL6A1P12109 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.78■□□□□ 0.6
COL6A1P12109 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.78■□□□□ 0.6
COL6A1P12109 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.78■□□□□ 0.6
COL6A1P12109 API5-211ENST00000534695 560 ntTSL 5 BASIC18.78■□□□□ 0.6
COL6A1P12109 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A1P12109 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.78■□□□□ 0.6
COL6A1P12109 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A1P12109 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.78■□□□□ 0.6
COL6A1P12109 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A1P12109 AL606495.2-201ENST00000605867 535 ntBASIC18.78■□□□□ 0.6
COL6A1P12109 AC018529.1-201ENST00000613063 361 ntBASIC18.78■□□□□ 0.6
COL6A1P12109 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A1P12109 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A1P12109 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
COL6A1P12109 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
COL6A1P12109 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A1P12109 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A1P12109 AC138969.3-201ENST00000546612 1459 ntBASIC18.77■□□□□ 0.6
COL6A1P12109 AC138932.2-201ENST00000548268 1459 ntBASIC18.77■□□□□ 0.6
COL6A1P12109 AC126755.4-201ENST00000549796 1459 ntBASIC18.77■□□□□ 0.6
COL6A1P12109 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A1P12109 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.77■□□□□ 0.6
COL6A1P12109 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A1P12109 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A1P12109 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A1P12109 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms