Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 AC092364.2-201ENST00000596710 2692 ntBASIC12.98□□□□□ -0.33
HLA-DQA1P01909 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 AC144831.1-201ENST00000573312 2656 ntBASIC12.98□□□□□ -0.33
HLA-DQA1P01909 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 MTHFR-217ENST00000641820 1569 ntBASIC12.98□□□□□ -0.33
HLA-DQA1P01909 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
HLA-DQA1P01909 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 LY6E-205ENST00000519611 635 ntTSL 3 BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 CKBP1-201ENST00000565489 1086 ntBASIC12.97□□□□□ -0.33
HLA-DQA1P01909 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 AC131212.4-201ENST00000623606 975 ntBASIC12.97□□□□□ -0.33
HLA-DQA1P01909 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 AC036111.1-201ENST00000533973 1582 ntBASIC12.97□□□□□ -0.33
HLA-DQA1P01909 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC12.97□□□□□ -0.33
HLA-DQA1P01909 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 AC092053.1-201ENST00000605787 1936 ntBASIC12.96□□□□□ -0.33
HLA-DQA1P01909 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 FAM45BP-202ENST00000592932 1624 ntBASIC12.96□□□□□ -0.33
HLA-DQA1P01909 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms