Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC19.98■□□□□ 0.79
CCDC39Q9UFE4 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 AC060834.1-201ENST00000443027 2032 ntBASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 AC096633.1-201ENST00000422446 749 ntBASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 AC124864.1-201ENST00000623408 392 ntBASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC39Q9UFE4 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 REXO1L11P-201ENST00000620964 1927 ntBASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 RN7SL606P-201ENST00000472779 293 ntBASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 LINC00554-201ENST00000564841 3011 ntBASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 AC005332.1-201ENST00000577698 1310 ntBASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 AC097374.2-201ENST00000618617 1306 ntBASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CCDC39Q9UFE4 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 FAM86EP-206ENST00000510506 987 ntBASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 AC087388.1-201ENST00000571370 1112 ntBASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 AL592071.1-201ENST00000611956 408 ntBASIC19.95■□□□□ 0.78
CCDC39Q9UFE4 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms