Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 YBX1P5-201ENST00000509441 847 ntBASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 AC096734.2-201ENST00000562054 433 ntBASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRAIPQ9BWF2 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 RHOQP3-201ENST00000437982 621 ntBASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 AC004967.1-201ENST00000453589 447 ntBASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 AP001160.2-201ENST00000596071 487 ntBASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRAIPQ9BWF2 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
TRAIPQ9BWF2 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.83■□□□□ 0.61
TRAIPQ9BWF2 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TRAIPQ9BWF2 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.83■□□□□ 0.61
TRAIPQ9BWF2 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRAIPQ9BWF2 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRAIPQ9BWF2 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 AL139327.4-201ENST00000612362 153 ntBASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 AC079781.4-201ENST00000641908 219 ntBASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 AC092865.6-201ENST00000642101 219 ntBASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 AC046185.3-201ENST00000623228 1824 ntBASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.83■□□□□ 0.6
TRAIPQ9BWF2 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 AL135999.2-201ENST00000622438 1686 ntBASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAIPQ9BWF2 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms