Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 AC105020.1-201ENST00000435356 2205 ntBASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 FAM86EP-206ENST00000510506 987 ntBASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 KRT8P26-201ENST00000534154 1276 ntBASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 AC091076.1-201ENST00000610741 619 ntBASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 AC092171.3-201ENST00000610122 2651 ntBASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 AC092068.3-201ENST00000587894 2016 ntBASIC17.59■□□□□ 0.41
TRIM56Q9BRZ2 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
TRIM56Q9BRZ2 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM56Q9BRZ2 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.58■□□□□ 0.41
TRIM56Q9BRZ2 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM56Q9BRZ2 AC016734.2-201ENST00000624325 1377 ntBASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 PCDHA14-201ENST00000506751 2298 ntBASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 LINC02012-201ENST00000608206 1725 ntBASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM56Q9BRZ2 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 PKD1P5-201ENST00000532415 10291 ntBASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms