Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 AC099522.2-201ENST00000607001 744 ntBASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 PP12613-201ENST00000424958 2230 ntBASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
PAAF1Q9BRP4 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 FZD10-202ENST00000539839 3282 ntBASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 AL139400.1-201ENST00000366220 510 ntBASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 AP000344.2-201ENST00000512987 629 ntBASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 AL138688.1-201ENST00000624851 1594 ntBASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PAAF1Q9BRP4 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 AC116353.5-201ENST00000638148 1699 ntBASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 HMGA1P7-201ENST00000406908 502 ntBASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 AC140658.5-201ENST00000438532 169 ntBASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 MIR4515-201ENST00000584082 81 ntBASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 AC022145.2-201ENST00000598203 171 ntBASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PAAF1Q9BRP4 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms