Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 AC083849.1-201ENST00000615227 514 ntBASIC12.93□□□□□ -0.34
LINC00477Q96M19 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 AC005915.1-201ENST00000624912 2018 ntBASIC12.93□□□□□ -0.34
LINC00477Q96M19 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC12.93□□□□□ -0.34
LINC00477Q96M19 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC00477Q96M19 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 EGFEM1P-202ENST00000431685 1563 ntBASIC12.92□□□□□ -0.34
LINC00477Q96M19 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 SPDYE13P-201ENST00000445314 798 ntBASIC12.92□□□□□ -0.34
LINC00477Q96M19 KRT8P10-201ENST00000450021 1447 ntBASIC12.92□□□□□ -0.34
LINC00477Q96M19 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 AC022616.7-201ENST00000525383 220 ntBASIC12.92□□□□□ -0.34
LINC00477Q96M19 KRT8P26-201ENST00000534154 1276 ntBASIC12.92□□□□□ -0.34
LINC00477Q96M19 LTBR-211ENST00000543190 785 ntTSL 3 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 AC011498.5-201ENST00000592027 486 ntBASIC12.92□□□□□ -0.34
LINC00477Q96M19 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC12.92□□□□□ -0.34
LINC00477Q96M19 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00477Q96M19 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC12.91□□□□□ -0.34
LINC00477Q96M19 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00477Q96M19 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00477Q96M19 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC12.91□□□□□ -0.34
LINC00477Q96M19 AL353593.2-201ENST00000602529 1483 ntBASIC12.91□□□□□ -0.34
LINC00477Q96M19 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00477Q96M19 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00477Q96M19 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00477Q96M19 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC12.91□□□□□ -0.34
LINC00477Q96M19 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
LINC00477Q96M19 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
LINC00477Q96M19 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00477Q96M19 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00477Q96M19 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00477Q96M19 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC12.91□□□□□ -0.34
LINC00477Q96M19 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC12.91□□□□□ -0.34
LINC00477Q96M19 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC12.91□□□□□ -0.34
LINC00477Q96M19 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00477Q96M19 AL136038.3-201ENST00000561909 1096 ntBASIC12.91□□□□□ -0.34
LINC00477Q96M19 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
LINC00477Q96M19 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC12.91□□□□□ -0.34
LINC00477Q96M19 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms