Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 GPS2P2-201ENST00000430745 888 ntBASIC17.43■□□□□ 0.38
CHFRQ96EP1 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 AC079140.1-201ENST00000508039 487 ntBASIC17.43■□□□□ 0.38
CHFRQ96EP1 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CHFRQ96EP1 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.42■□□□□ 0.38
CHFRQ96EP1 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.42■□□□□ 0.38
CHFRQ96EP1 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 HMGA1P7-201ENST00000406908 502 ntBASIC17.42■□□□□ 0.38
CHFRQ96EP1 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.42■□□□□ 0.38
CHFRQ96EP1 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.42■□□□□ 0.38
CHFRQ96EP1 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CHFRQ96EP1 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.42■□□□□ 0.38
CHFRQ96EP1 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 Z92544.3-201ENST00000624747 417 ntBASIC17.42■□□□□ 0.38
CHFRQ96EP1 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CHFRQ96EP1 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
CHFRQ96EP1 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.42■□□□□ 0.38
CHFRQ96EP1 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHFRQ96EP1 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CHFRQ96EP1 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 AC005237.2-201ENST00000434368 219 ntBASIC17.41■□□□□ 0.38
CHFRQ96EP1 SPDYE11-202ENST00000450699 704 ntBASIC17.41■□□□□ 0.38
CHFRQ96EP1 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 AC069335.1-201ENST00000489972 472 ntBASIC17.41■□□□□ 0.38
CHFRQ96EP1 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 DUX4L27-201ENST00000554796 1261 ntBASIC17.41■□□□□ 0.38
CHFRQ96EP1 SPDYE9P-201ENST00000570642 692 ntBASIC17.41■□□□□ 0.38
CHFRQ96EP1 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 MIR4515-201ENST00000584082 81 ntBASIC17.41■□□□□ 0.38
CHFRQ96EP1 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 SPDYE10P-202ENST00000612005 668 ntBASIC17.41■□□□□ 0.38
CHFRQ96EP1 SPDYE8P-202ENST00000612377 668 ntBASIC17.41■□□□□ 0.38
CHFRQ96EP1 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.41■□□□□ 0.38
CHFRQ96EP1 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHFRQ96EP1 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms