Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SKA3Q8IX90 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SKA3Q8IX90 AC016396.2-201ENST00000562575 1417 ntBASIC15.27■□□□□ 0.04
SKA3Q8IX90 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SKA3Q8IX90 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SKA3Q8IX90 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SKA3Q8IX90 AKR1C7P-201ENST00000305623 895 ntBASIC15.27■□□□□ 0.04
SKA3Q8IX90 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SKA3Q8IX90 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SKA3Q8IX90 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SKA3Q8IX90 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 MTDHP3-201ENST00000594186 672 ntBASIC15.27■□□□□ 0.04
SKA3Q8IX90 REXO1L6P-202ENST00000619970 1078 ntBASIC15.27■□□□□ 0.04
SKA3Q8IX90 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.27■□□□□ 0.04
SKA3Q8IX90 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SKA3Q8IX90 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SKA3Q8IX90 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SKA3Q8IX90 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SKA3Q8IX90 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SKA3Q8IX90 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.27■□□□□ 0.03
SKA3Q8IX90 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.27■□□□□ 0.03
SKA3Q8IX90 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
SKA3Q8IX90 AC008894.3-201ENST00000624324 3103 ntBASIC15.27■□□□□ 0.03
SKA3Q8IX90 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.27■□□□□ 0.03
SKA3Q8IX90 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SKA3Q8IX90 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
SKA3Q8IX90 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.26■□□□□ 0.03
SKA3Q8IX90 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.26■□□□□ 0.03
SKA3Q8IX90 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 AL023806.1-201ENST00000603994 1649 ntBASIC15.26■□□□□ 0.03
SKA3Q8IX90 AC148477.5-201ENST00000625164 1645 ntBASIC15.26■□□□□ 0.03
SKA3Q8IX90 AC079776.2-201ENST00000641154 1609 ntBASIC15.26■□□□□ 0.03
SKA3Q8IX90 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.26■□□□□ 0.03
SKA3Q8IX90 SPDYE21P-201ENST00000413323 827 ntBASIC15.26■□□□□ 0.03
SKA3Q8IX90 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 RBM17P3-201ENST00000417687 1192 ntBASIC15.26■□□□□ 0.03
SKA3Q8IX90 AL020989.1-201ENST00000422979 469 ntBASIC15.26■□□□□ 0.03
SKA3Q8IX90 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.26■□□□□ 0.03
SKA3Q8IX90 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.26■□□□□ 0.03
SKA3Q8IX90 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.26■□□□□ 0.03
SKA3Q8IX90 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
SKA3Q8IX90 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
SKA3Q8IX90 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC15.26■□□□□ 0.03
SKA3Q8IX90 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 AL118508.1-201ENST00000613502 2345 ntBASIC15.26■□□□□ 0.03
SKA3Q8IX90 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.26■□□□□ 0.03
SKA3Q8IX90 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SKA3Q8IX90 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.26■□□□□ 0.03
SKA3Q8IX90 AD000864.1-201ENST00000624076 2295 ntBASIC15.26■□□□□ 0.03
SKA3Q8IX90 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 AL596257.1-201ENST00000641463 2694 ntBASIC15.25■□□□□ 0.03
SKA3Q8IX90 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC15.25■□□□□ 0.03
SKA3Q8IX90 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SKA3Q8IX90 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms