Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 AL603832.2-201ENST00000566195 2125 ntBASIC10.72□□□□□ -0.69
LINC00643Q86TS7 AC006486.2-201ENST00000624246 2199 ntBASIC10.72□□□□□ -0.69
LINC00643Q86TS7 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 ACE-203ENST00000413513 2237 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 TSPY23P-201ENST00000440136 739 ntBASIC10.71□□□□□ -0.69
LINC00643Q86TS7 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 AL023775.1-201ENST00000454907 1746 ntBASIC10.71□□□□□ -0.69
LINC00643Q86TS7 AMT-206ENST00000458307 1860 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 AP005117.1-202ENST00000581724 1908 ntBASIC10.71□□□□□ -0.69
LINC00643Q86TS7 AC010327.5-201ENST00000586923 3061 ntBASIC10.71□□□□□ -0.69
LINC00643Q86TS7 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC10.71□□□□□ -0.69
LINC00643Q86TS7 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC10.71□□□□□ -0.7
LINC00643Q86TS7 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC10.71□□□□□ -0.7
LINC00643Q86TS7 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
LINC00643Q86TS7 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
LINC00643Q86TS7 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.7
LINC00643Q86TS7 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
LINC00643Q86TS7 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
LINC00643Q86TS7 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC10.71□□□□□ -0.7
LINC00643Q86TS7 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.7
LINC00643Q86TS7 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 BX664725.1-201ENST00000438252 379 ntBASIC10.7□□□□□ -0.7
LINC00643Q86TS7 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms