Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SH3RF1Q7Z6J0 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 AC106820.2-201ENST00000563775 3264 ntBASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SH3RF1Q7Z6J0 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 AC027612.4-201ENST00000605371 583 ntBASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 AC073592.4-201ENST00000623827 446 ntBASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SH3RF1Q7Z6J0 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.64■□□□□ 0.74
SH3RF1Q7Z6J0 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SH3RF1Q7Z6J0 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SH3RF1Q7Z6J0 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms