Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL28A1Q2UY09 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 AC141586.5-201ENST00000624546 2050 ntBASIC16.55■□□□□ 0.24
COL28A1Q2UY09 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 TFAMP1-201ENST00000412727 736 ntBASIC16.55■□□□□ 0.24
COL28A1Q2UY09 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 ELK2BP-201ENST00000415014 1224 ntBASIC16.55■□□□□ 0.24
COL28A1Q2UY09 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 AC093010.1-201ENST00000473625 1624 ntBASIC16.55■□□□□ 0.24
COL28A1Q2UY09 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL28A1Q2UY09 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 BASP1P1-201ENST00000430708 665 ntBASIC16.54■□□□□ 0.24
COL28A1Q2UY09 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 AC067863.1-201ENST00000494933 530 ntBASIC16.54■□□□□ 0.24
COL28A1Q2UY09 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 KRT19P2-202ENST00000557173 1012 ntBASIC16.54■□□□□ 0.24
COL28A1Q2UY09 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 AC091812.2-201ENST00000619081 385 ntBASIC16.54■□□□□ 0.24
COL28A1Q2UY09 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 AC006504.4-201ENST00000592118 1568 ntBASIC16.54■□□□□ 0.24
COL28A1Q2UY09 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL28A1Q2UY09 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 AC009053.2-201ENST00000563701 2365 ntBASIC16.53■□□□□ 0.24
COL28A1Q2UY09 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 MIR661-201ENST00000384842 89 ntBASIC16.53■□□□□ 0.24
COL28A1Q2UY09 IGLL3P-201ENST00000412472 434 ntBASIC16.53■□□□□ 0.24
COL28A1Q2UY09 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.53■□□□□ 0.24
COL28A1Q2UY09 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
COL28A1Q2UY09 AP005018.1-201ENST00000525475 301 ntBASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms