Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL9A1P20849 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.59■□□□□ 0.41
COL9A1P20849 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.58■□□□□ 0.41
COL9A1P20849 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL9A1P20849 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.58■□□□□ 0.41
COL9A1P20849 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL9A1P20849 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL9A1P20849 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.58■□□□□ 0.41
COL9A1P20849 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL9A1P20849 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL9A1P20849 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.58■□□□□ 0.41
COL9A1P20849 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.58■□□□□ 0.41
COL9A1P20849 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL9A1P20849 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
COL9A1P20849 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.58■□□□□ 0.4
COL9A1P20849 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 MIR1908-201ENST00000410394 80 ntBASIC17.58■□□□□ 0.4
COL9A1P20849 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
COL9A1P20849 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.58■□□□□ 0.4
COL9A1P20849 AC027369.6-201ENST00000525520 931 ntBASIC17.58■□□□□ 0.4
COL9A1P20849 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.58■□□□□ 0.4
COL9A1P20849 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.58■□□□□ 0.4
COL9A1P20849 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.58■□□□□ 0.4
COL9A1P20849 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC17.58■□□□□ 0.4
COL9A1P20849 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.58■□□□□ 0.4
COL9A1P20849 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.58■□□□□ 0.4
COL9A1P20849 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.58■□□□□ 0.4
COL9A1P20849 U62317.3-201ENST00000608319 855 ntBASIC17.58■□□□□ 0.4
COL9A1P20849 MIR6775-201ENST00000617557 69 ntBASIC17.58■□□□□ 0.4
COL9A1P20849 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.58■□□□□ 0.4
COL9A1P20849 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
COL9A1P20849 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL9A1P20849 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL9A1P20849 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.57■□□□□ 0.4
COL9A1P20849 TNXA-203ENST00000507684 2038 ntBASIC17.57■□□□□ 0.4
COL9A1P20849 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
COL9A1P20849 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
COL9A1P20849 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL9A1P20849 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL9A1P20849 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL9A1P20849 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL9A1P20849 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.57■□□□□ 0.4
COL9A1P20849 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL9A1P20849 AC002558.1-201ENST00000488906 803 ntBASIC17.57■□□□□ 0.4
COL9A1P20849 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.57■□□□□ 0.4
COL9A1P20849 AC243562.1-201ENST00000560672 389 ntBASIC17.57■□□□□ 0.4
COL9A1P20849 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL9A1P20849 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL9A1P20849 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL9A1P20849 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
COL9A1P20849 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL9A1P20849 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
COL9A1P20849 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.56■□□□□ 0.4
COL9A1P20849 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.56■□□□□ 0.4
COL9A1P20849 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.56■□□□□ 0.4
COL9A1P20849 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL9A1P20849 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.56■□□□□ 0.4
COL9A1P20849 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.56■□□□□ 0.4
COL9A1P20849 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL9A1P20849 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL9A1P20849 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
COL9A1P20849 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
COL9A1P20849 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL9A1P20849 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL9A1P20849 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL9A1P20849 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL9A1P20849 FXNP2-201ENST00000411625 547 ntBASIC17.56■□□□□ 0.4
COL9A1P20849 TSSK5P-201ENST00000423978 907 ntBASIC17.56■□□□□ 0.4
COL9A1P20849 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC17.56■□□□□ 0.4
COL9A1P20849 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
COL9A1P20849 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17.56■□□□□ 0.4
COL9A1P20849 AC099522.2-201ENST00000607001 744 ntBASIC17.56■□□□□ 0.4
COL9A1P20849 UBE2Q2P6-202ENST00000617217 443 ntTSL 5 BASIC17.56■□□□□ 0.4
COL9A1P20849 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.56■□□□□ 0.4
COL9A1P20849 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL9A1P20849 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
COL9A1P20849 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.56■□□□□ 0.4
COL9A1P20849 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
COL9A1P20849 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL9A1P20849 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
COL9A1P20849 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL9A1P20849 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
COL9A1P20849 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL9A1P20849 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.55■□□□□ 0.4
COL9A1P20849 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms