Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LDLRP01130 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.69■□□□□ 0.26
LDLRP01130 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.69■□□□□ 0.26
LDLRP01130 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
LDLRP01130 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
LDLRP01130 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.69■□□□□ 0.26
LDLRP01130 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDLRP01130 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
LDLRP01130 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.68■□□□□ 0.26
LDLRP01130 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LDLRP01130 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.68■□□□□ 0.26
LDLRP01130 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LDLRP01130 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.68■□□□□ 0.26
LDLRP01130 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
LDLRP01130 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.68■□□□□ 0.26
LDLRP01130 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.68■□□□□ 0.26
LDLRP01130 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.68■□□□□ 0.26
LDLRP01130 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.68■□□□□ 0.26
LDLRP01130 SEC1P-202ENST00000473944 940 ntBASIC16.68■□□□□ 0.26
LDLRP01130 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.68■□□□□ 0.26
LDLRP01130 RNF126P1-202ENST00000569893 925 ntBASIC16.68■□□□□ 0.26
LDLRP01130 AC138894.3-201ENST00000603787 634 ntBASIC16.68■□□□□ 0.26
LDLRP01130 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.68■□□□□ 0.26
LDLRP01130 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.68■□□□□ 0.26
LDLRP01130 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LDLRP01130 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.68■□□□□ 0.26
LDLRP01130 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.68■□□□□ 0.26
LDLRP01130 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.68■□□□□ 0.26
LDLRP01130 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LDLRP01130 KRT8P7-201ENST00000533003 1432 ntBASIC16.68■□□□□ 0.26
LDLRP01130 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.68■□□□□ 0.26
LDLRP01130 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 AC132938.6-201ENST00000623828 1655 ntBASIC16.68■□□□□ 0.26
LDLRP01130 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDLRP01130 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.68■□□□□ 0.26
LDLRP01130 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LDLRP01130 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.68■□□□□ 0.26
LDLRP01130 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.67■□□□□ 0.26
LDLRP01130 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LDLRP01130 AL391807.1-203ENST00000604392 2365 ntBASIC16.67■□□□□ 0.26
LDLRP01130 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.67■□□□□ 0.26
LDLRP01130 DOC2GP-204ENST00000639052 2548 ntBASIC16.67■□□□□ 0.26
LDLRP01130 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
LDLRP01130 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
LDLRP01130 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.67■□□□□ 0.26
LDLRP01130 KRT18P23-201ENST00000435622 1283 ntBASIC16.67■□□□□ 0.26
LDLRP01130 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.67■□□□□ 0.26
LDLRP01130 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.67■□□□□ 0.26
LDLRP01130 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.67■□□□□ 0.26
LDLRP01130 AL157888.1-201ENST00000631930 593 ntBASIC16.67■□□□□ 0.26
LDLRP01130 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
LDLRP01130 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LDLRP01130 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LDLRP01130 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.67■□□□□ 0.26
LDLRP01130 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LDLRP01130 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.67■□□□□ 0.26
LDLRP01130 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.67■□□□□ 0.26
LDLRP01130 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.67■□□□□ 0.26
LDLRP01130 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDLRP01130 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LDLRP01130 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LDLRP01130 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms