Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.17■□□□□ 0.02
LMX1BO60663 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
LMX1BO60663 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
LMX1BO60663 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.17■□□□□ 0.02
LMX1BO60663 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.17■□□□□ 0.02
LMX1BO60663 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.17■□□□□ 0.02
LMX1BO60663 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
LMX1BO60663 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.17■□□□□ 0.02
LMX1BO60663 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 AC079328.2-201ENST00000561241 3354 ntBASIC15.17■□□□□ 0.02
LMX1BO60663 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
LMX1BO60663 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
LMX1BO60663 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
LMX1BO60663 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC15.17■□□□□ 0.02
LMX1BO60663 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 TBC1D3P5-201ENST00000579401 1545 ntBASIC15.17■□□□□ 0.02
LMX1BO60663 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1BO60663 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC15.16■□□□□ 0.02
LMX1BO60663 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
LMX1BO60663 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 AC105020.1-201ENST00000435356 2205 ntBASIC15.16■□□□□ 0.02
LMX1BO60663 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.16■□□□□ 0.02
LMX1BO60663 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
LMX1BO60663 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.16■□□□□ 0.02
LMX1BO60663 NUS1P2-201ENST00000417358 873 ntBASIC15.16■□□□□ 0.02
LMX1BO60663 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.16■□□□□ 0.02
LMX1BO60663 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC15.16■□□□□ 0.02
LMX1BO60663 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.16■□□□□ 0.02
LMX1BO60663 ABR-204ENST00000543210 1049 ntTSL 2 BASIC15.16■□□□□ 0.02
LMX1BO60663 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.16■□□□□ 0.02
LMX1BO60663 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.16■□□□□ 0.02
LMX1BO60663 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.16■□□□□ 0.02
LMX1BO60663 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.16■□□□□ 0.02
LMX1BO60663 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1BO60663 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC15.15■□□□□ 0.02
LMX1BO60663 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.15■□□□□ 0.02
LMX1BO60663 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC15.15■□□□□ 0.02
LMX1BO60663 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
LMX1BO60663 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 COX5BP2-201ENST00000392354 334 ntBASIC15.15■□□□□ 0.02
LMX1BO60663 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 AC007967.3-201ENST00000434308 558 ntBASIC15.15■□□□□ 0.02
LMX1BO60663 MINOS1P3-201ENST00000457048 203 ntBASIC15.15■□□□□ 0.02
LMX1BO60663 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC15.15■□□□□ 0.02
LMX1BO60663 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.15■□□□□ 0.02
LMX1BO60663 ABR-217ENST00000572441 563 ntTSL 4 BASIC15.15■□□□□ 0.02
LMX1BO60663 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC15.15■□□□□ 0.02
LMX1BO60663 AC019129.2-201ENST00000609837 1235 ntBASIC15.15■□□□□ 0.02
LMX1BO60663 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.15■□□□□ 0.02
LMX1BO60663 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 NSUN5P1-202ENST00000421140 1535 ntBASIC15.15■□□□□ 0.02
LMX1BO60663 NSUN5P2-203ENST00000457352 1529 ntBASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms