Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.29■□□□□ 0.04
SGCEO43556 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SGCEO43556 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
SGCEO43556 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.29■□□□□ 0.04
SGCEO43556 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC15.29■□□□□ 0.04
SGCEO43556 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SGCEO43556 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.29■□□□□ 0.04
SGCEO43556 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
SGCEO43556 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
SGCEO43556 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SGCEO43556 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 AL353593.2-201ENST00000602529 1483 ntBASIC15.28■□□□□ 0.04
SGCEO43556 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.28■□□□□ 0.04
SGCEO43556 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SGCEO43556 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 INTS4P1-201ENST00000438455 1935 ntBASIC15.28■□□□□ 0.04
SGCEO43556 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC15.28■□□□□ 0.04
SGCEO43556 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 RCN1P2-201ENST00000398357 915 ntBASIC15.28■□□□□ 0.04
SGCEO43556 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SGCEO43556 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.28■□□□□ 0.04
SGCEO43556 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
SGCEO43556 AC114341.1-201ENST00000618070 349 ntBASIC15.28■□□□□ 0.04
SGCEO43556 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SGCEO43556 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.28■□□□□ 0.04
SGCEO43556 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SGCEO43556 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
SGCEO43556 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.28■□□□□ 0.04
SGCEO43556 AC046185.3-201ENST00000623228 1824 ntBASIC15.28■□□□□ 0.04
SGCEO43556 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SGCEO43556 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SGCEO43556 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SGCEO43556 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.27■□□□□ 0.04
SGCEO43556 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.27■□□□□ 0.04
SGCEO43556 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SGCEO43556 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
SGCEO43556 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
SGCEO43556 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.27■□□□□ 0.04
SGCEO43556 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC15.27■□□□□ 0.04
SGCEO43556 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 THAP5-204ENST00000438865 868 ntTSL 2 BASIC15.27■□□□□ 0.04
SGCEO43556 NKTR-203ENST00000442970 646 ntTSL 2 BASIC15.27■□□□□ 0.04
SGCEO43556 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.27■□□□□ 0.04
SGCEO43556 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 PNN-202ENST00000553331 656 ntTSL 3 BASIC15.27■□□□□ 0.04
SGCEO43556 STK25P1-201ENST00000585406 838 ntBASIC15.27■□□□□ 0.04
SGCEO43556 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC15.27■□□□□ 0.04
SGCEO43556 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SGCEO43556 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC15.27■□□□□ 0.04
SGCEO43556 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SGCEO43556 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SGCEO43556 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SGCEO43556 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.27■□□□□ 0.03
SGCEO43556 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SGCEO43556 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SGCEO43556 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.27■□□□□ 0.03
SGCEO43556 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC15.27■□□□□ 0.03
SGCEO43556 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms