Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
MSH4O15457 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSH4O15457 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSH4O15457 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
MSH4O15457 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
MSH4O15457 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSH4O15457 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.27■□□□□ 0.68
MSH4O15457 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.27■□□□□ 0.68
MSH4O15457 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.27■□□□□ 0.68
MSH4O15457 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.27■□□□□ 0.68
MSH4O15457 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MSH4O15457 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
MSH4O15457 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.27■□□□□ 0.68
MSH4O15457 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
MSH4O15457 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.27■□□□□ 0.68
MSH4O15457 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSH4O15457 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.27■□□□□ 0.68
MSH4O15457 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSH4O15457 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
MSH4O15457 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
MSH4O15457 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.27■□□□□ 0.68
MSH4O15457 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
MSH4O15457 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.27■□□□□ 0.67
MSH4O15457 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
MSH4O15457 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
MSH4O15457 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
MSH4O15457 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
MSH4O15457 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
MSH4O15457 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
MSH4O15457 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
MSH4O15457 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.26■□□□□ 0.67
MSH4O15457 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
MSH4O15457 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
MSH4O15457 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
MSH4O15457 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH4O15457 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
MSH4O15457 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSH4O15457 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.25■□□□□ 0.67
MSH4O15457 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH4O15457 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
MSH4O15457 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH4O15457 AC106820.2-201ENST00000563775 3264 ntBASIC19.25■□□□□ 0.67
MSH4O15457 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.25■□□□□ 0.67
MSH4O15457 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH4O15457 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
MSH4O15457 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSH4O15457 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
MSH4O15457 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSH4O15457 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH4O15457 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH4O15457 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.25■□□□□ 0.67
MSH4O15457 RNA5SP416-201ENST00000516838 111 ntBASIC19.25■□□□□ 0.67
MSH4O15457 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
MSH4O15457 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.25■□□□□ 0.67
MSH4O15457 AC107918.2-201ENST00000530817 355 ntBASIC19.25■□□□□ 0.67
MSH4O15457 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.25■□□□□ 0.67
MSH4O15457 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.25■□□□□ 0.67
MSH4O15457 REXO1L3P-201ENST00000622202 1288 ntBASIC19.25■□□□□ 0.67
MSH4O15457 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSH4O15457 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSH4O15457 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSH4O15457 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSH4O15457 HTR7P1-202ENST00000624664 4411 ntBASIC19.25■□□□□ 0.67
MSH4O15457 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.25■□□□□ 0.67
MSH4O15457 PMS2P7-201ENST00000506558 1336 ntBASIC19.25■□□□□ 0.67
MSH4O15457 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH4O15457 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH4O15457 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH4O15457 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH4O15457 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH4O15457 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
MSH4O15457 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
MSH4O15457 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH4O15457 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.24■□□□□ 0.67
MSH4O15457 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH4O15457 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
MSH4O15457 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MSH4O15457 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
MSH4O15457 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.24■□□□□ 0.67
MSH4O15457 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
MSH4O15457 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.24■□□□□ 0.67
MSH4O15457 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.24■□□□□ 0.67
MSH4O15457 AC018845.2-201ENST00000568326 409 ntBASIC19.24■□□□□ 0.67
MSH4O15457 AC010507.1-201ENST00000633895 436 ntBASIC19.24■□□□□ 0.67
MSH4O15457 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSH4O15457 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
MSH4O15457 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms