Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM38O00635 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM38O00635 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM38O00635 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM38O00635 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TRIM38O00635 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM38O00635 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.37■□□□□ 0.37
TRIM38O00635 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
TRIM38O00635 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM38O00635 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.36■□□□□ 0.37
TRIM38O00635 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.36■□□□□ 0.37
TRIM38O00635 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM38O00635 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.36■□□□□ 0.37
TRIM38O00635 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM38O00635 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
TRIM38O00635 AC097374.2-201ENST00000618617 1306 ntBASIC17.36■□□□□ 0.37
TRIM38O00635 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.36■□□□□ 0.37
TRIM38O00635 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM38O00635 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TRIM38O00635 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM38O00635 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
TRIM38O00635 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM38O00635 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM38O00635 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM38O00635 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM38O00635 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
TRIM38O00635 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM38O00635 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM38O00635 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TRIM38O00635 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM38O00635 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
TRIM38O00635 AL118508.1-201ENST00000613502 2345 ntBASIC17.35■□□□□ 0.37
TRIM38O00635 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TRIM38O00635 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM38O00635 AL591424.1-201ENST00000442569 1213 ntBASIC17.35■□□□□ 0.37
TRIM38O00635 KRT18P3-201ENST00000451602 1288 ntBASIC17.35■□□□□ 0.37
TRIM38O00635 BX005266.1-201ENST00000473402 457 ntBASIC17.35■□□□□ 0.37
TRIM38O00635 UNC93B6-202ENST00000528242 690 ntBASIC17.35■□□□□ 0.37
TRIM38O00635 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM38O00635 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.35■□□□□ 0.37
TRIM38O00635 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM38O00635 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM38O00635 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM38O00635 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
TRIM38O00635 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM38O00635 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.34■□□□□ 0.37
TRIM38O00635 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM38O00635 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM38O00635 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM38O00635 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TRIM38O00635 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM38O00635 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM38O00635 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM38O00635 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM38O00635 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM38O00635 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM38O00635 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM38O00635 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.34■□□□□ 0.37
TRIM38O00635 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM38O00635 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms