Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.7■■□□□ 1.06
PTP4A1Q93096 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTP4A1Q93096 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.7■■□□□ 1.06
PTP4A1Q93096 AC142381.3-201ENST00000568208 1670 ntBASIC21.69■■□□□ 1.06
PTP4A1Q93096 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.69■■□□□ 1.06
PTP4A1Q93096 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTP4A1Q93096 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTP4A1Q93096 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.69■■□□□ 1.06
PTP4A1Q93096 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.69■■□□□ 1.06
PTP4A1Q93096 CR559946.2-201ENST00000623684 991 ntBASIC21.69■■□□□ 1.06
PTP4A1Q93096 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PTP4A1Q93096 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
PTP4A1Q93096 AC022211.4-201ENST00000625094 2161 ntBASIC21.68■■□□□ 1.06
PTP4A1Q93096 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTP4A1Q93096 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PTP4A1Q93096 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.68■■□□□ 1.06
PTP4A1Q93096 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PTP4A1Q93096 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTP4A1Q93096 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PTP4A1Q93096 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTP4A1Q93096 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
PTP4A1Q93096 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.67■■□□□ 1.06
PTP4A1Q93096 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTP4A1Q93096 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTP4A1Q93096 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
PTP4A1Q93096 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTP4A1Q93096 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
PTP4A1Q93096 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTP4A1Q93096 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTP4A1Q93096 AL359504.2-201ENST00000605506 1601 ntBASIC21.66■■□□□ 1.06
PTP4A1Q93096 AL359258.2-201ENST00000564063 1566 ntBASIC21.66■■□□□ 1.06
PTP4A1Q93096 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PTP4A1Q93096 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PTP4A1Q93096 HLA-V-202ENST00000446817 847 ntBASIC21.66■■□□□ 1.06
PTP4A1Q93096 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.66■■□□□ 1.06
PTP4A1Q93096 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTP4A1Q93096 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.66■■□□□ 1.06
PTP4A1Q93096 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTP4A1Q93096 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PTP4A1Q93096 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTP4A1Q93096 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PTP4A1Q93096 AC016575.1-201ENST00000607026 382 ntBASIC21.65■■□□□ 1.06
PTP4A1Q93096 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTP4A1Q93096 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTP4A1Q93096 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.65■■□□□ 1.06
PTP4A1Q93096 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTP4A1Q93096 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.64■■□□□ 1.06
PTP4A1Q93096 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.64■■□□□ 1.06
PTP4A1Q93096 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PTP4A1Q93096 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.64■■□□□ 1.05
PTP4A1Q93096 AC138932.3-201ENST00000567634 1902 ntBASIC21.64■■□□□ 1.05
PTP4A1Q93096 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PTP4A1Q93096 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.64■■□□□ 1.05
PTP4A1Q93096 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
PTP4A1Q93096 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PTP4A1Q93096 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PTP4A1Q93096 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.63■■□□□ 1.05
PTP4A1Q93096 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
PTP4A1Q93096 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.62■■□□□ 1.05
PTP4A1Q93096 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PTP4A1Q93096 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.62■■□□□ 1.05
PTP4A1Q93096 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PTP4A1Q93096 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.61■■□□□ 1.05
PTP4A1Q93096 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.61■■□□□ 1.05
PTP4A1Q93096 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.6■■□□□ 1.05
PTP4A1Q93096 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.6■■□□□ 1.05
PTP4A1Q93096 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTP4A1Q93096 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTP4A1Q93096 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTP4A1Q93096 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.6■■□□□ 1.05
PTP4A1Q93096 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PTP4A1Q93096 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTP4A1Q93096 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTP4A1Q93096 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PTP4A1Q93096 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.59■■□□□ 1.05
PTP4A1Q93096 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTP4A1Q93096 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.59■■□□□ 1.05
PTP4A1Q93096 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTP4A1Q93096 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
PTP4A1Q93096 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTP4A1Q93096 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
PTP4A1Q93096 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTP4A1Q93096 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTP4A1Q93096 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTP4A1Q93096 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.58■■□□□ 1.05
PTP4A1Q93096 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PTP4A1Q93096 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.58■■□□□ 1.05
PTP4A1Q93096 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
PTP4A1Q93096 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
PTP4A1Q93096 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTP4A1Q93096 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTP4A1Q93096 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PTP4A1Q93096 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTP4A1Q93096 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTP4A1Q93096 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PTP4A1Q93096 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.57■■□□□ 1.04
PTP4A1Q93096 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTP4A1Q93096 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTP4A1Q93096 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
PTP4A1Q93096 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms