Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.099e-8■■■■■ 26.8
DDX55Q8NHQ9 KIF1B-212ENST00000622724 8588 ntTSL 1 (best) BASIC12.25□□□□□ -0.458e-11■■■■■ 26.8
DDX55Q8NHQ9 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC10.34□□□□□ -0.758e-11■■■■■ 26.8
DDX55Q8NHQ9 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC9.58□□□□□ -0.888e-11■■■■■ 26.8
DDX55Q8NHQ9 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC7.69□□□□□ -1.188e-11■■■■■ 26.8
DDX55Q8NHQ9 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC26.44■■□□□ 1.823e-6■■■■□ 26.7
DDX55Q8NHQ9 RTL8C-203ENST00000495563 578 ntTSL 514.24□□□□□ -0.133e-6■■■■□ 26.7
DDX55Q8NHQ9 RTL8C-202ENST00000464369 616 ntTSL 512.4□□□□□ -0.423e-6■■■■□ 26.7
DDX55Q8NHQ9 COLGALT1-202ENST00000593832 2941 ntTSL 214.72□□□□□ -0.055e-9■■■■□ 26.7
DDX55Q8NHQ9 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.075e-9■■■■□ 26.7
DDX55Q8NHQ9 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.725e-8■■■■□ 26.6
DDX55Q8NHQ9 CRIP1-204ENST00000460900 1443 ntTSL 227.77■■■□□ 2.045e-8■■■■□ 26.6
DDX55Q8NHQ9 CRIP1-206ENST00000496700 2241 ntTSL 224.96■■□□□ 1.595e-8■■■■□ 26.6
DDX55Q8NHQ9 CRIP1-205ENST00000461556 638 ntTSL 221.44■■□□□ 1.025e-8■■■■□ 26.6
DDX55Q8NHQ9 AL928654.4-202ENST00000547940 435 ntTSL 520.64■□□□□ 0.895e-8■■■■□ 26.6
DDX55Q8NHQ9 AL928654.4-205ENST00000550554 613 ntAPPRIS ALT2 TSL 320.52■□□□□ 0.885e-8■■■■□ 26.6
DDX55Q8NHQ9 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.775e-8■■■■□ 26.6
DDX55Q8NHQ9 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.665e-8■■■■□ 26.6
DDX55Q8NHQ9 AL928654.4-201ENST00000477724 678 ntAPPRIS P5 TSL 417.65■□□□□ 0.425e-8■■■■□ 26.6
DDX55Q8NHQ9 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.355e-8■■■■□ 26.6
DDX55Q8NHQ9 AL928654.4-203ENST00000553228 337 ntAPPRIS ALT2 TSL 214.95□□□□□ -0.025e-8■■■■□ 26.6
DDX55Q8NHQ9 AL928654.4-204ENST00000547184 460 ntAPPRIS ALT2 TSL 213.18□□□□□ -0.35e-8■■■■□ 26.6
DDX55Q8NHQ9 TK1-205ENST00000590862 642 ntTSL 3 BASIC21.97■■□□□ 1.117e-24■■■■□ 26.6
DDX55Q8NHQ9 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.631e-25■■■■□ 26.5
DDX55Q8NHQ9 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.917e-9■■■■□ 26.5
DDX55Q8NHQ9 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC23.8■■□□□ 1.47e-9■■■■□ 26.5
DDX55Q8NHQ9 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC17.88■□□□□ 0.457e-9■■■■□ 26.5
DDX55Q8NHQ9 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC17.51■□□□□ 0.397e-9■■■■□ 26.5
DDX55Q8NHQ9 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.473e-9■■■■□ 26.5
DDX55Q8NHQ9 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.37□□□□□ -1.553e-9■■■■□ 26.5
DDX55Q8NHQ9 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.95□□□□□ -1.783e-9■■■■□ 26.5
DDX55Q8NHQ9 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.265e-7■■■■□ 26.5
DDX55Q8NHQ9 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.37■■□□□ 1.812e-6■■■■□ 26.5
DDX55Q8NHQ9 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC24.73■■□□□ 1.552e-6■■■■□ 26.5
DDX55Q8NHQ9 FPGS-208ENST00000467826 829 ntTSL 524.33■■□□□ 1.492e-6■■■■□ 26.5
DDX55Q8NHQ9 FPGS-207ENST00000460181 2206 ntTSL 1 (best)20.91■□□□□ 0.942e-6■■■■□ 26.5
DDX55Q8NHQ9 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.912e-6■■■■□ 26.5
DDX55Q8NHQ9 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.51■□□□□ 0.712e-6■■■■□ 26.5
DDX55Q8NHQ9 SPHK1-206ENST00000590379 588 ntTSL 325.42■■□□□ 1.661e-6■■■■□ 26.5
DDX55Q8NHQ9 SPHK1-205ENST00000588682 858 ntTSL 323.49■■□□□ 1.351e-6■■■■□ 26.5
DDX55Q8NHQ9 SPHK1-204ENST00000587167 456 ntTSL 423.49■■□□□ 1.351e-6■■■■□ 26.5
DDX55Q8NHQ9 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC22.78■■□□□ 1.242e-10■■■■□ 26.4
DDX55Q8NHQ9 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.652e-10■■■■□ 26.4
DDX55Q8NHQ9 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.52e-10■■■■□ 26.4
DDX55Q8NHQ9 ZMIZ2-209ENST00000463931 861 ntTSL 417.51■□□□□ 0.392e-10■■■■□ 26.4
DDX55Q8NHQ9 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC17.03■□□□□ 0.322e-10■■■■□ 26.4
DDX55Q8NHQ9 ZMIZ2-210ENST00000478045 3549 ntTSL 1 (best)15.5■□□□□ 0.072e-10■■■■□ 26.4
DDX55Q8NHQ9 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.012e-10■■■■□ 26.4
DDX55Q8NHQ9 ZMIZ2-208ENST00000463056 3240 ntTSL 214.98□□□□□ -0.012e-10■■■■□ 26.4
DDX55Q8NHQ9 ZMIZ2-215ENST00000615423 2772 ntTSL 5 BASIC14.01□□□□□ -0.172e-10■■■■□ 26.4
DDX55Q8NHQ9 AHSP-203ENST00000569954 391 ntTSL 512.1□□□□□ -0.472e-10■■■■□ 26.4
DDX55Q8NHQ9 ZMIZ2-201ENST00000265346 3643 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.52e-10■■■■□ 26.4
DDX55Q8NHQ9 ZMIZ2-205ENST00000433667 3800 ntTSL 5 BASIC11.81□□□□□ -0.522e-10■■■■□ 26.4
DDX55Q8NHQ9 ZMIZ2-203ENST00000413916 3773 ntTSL 1 (best) BASIC10.68□□□□□ -0.72e-10■■■■□ 26.4
DDX55Q8NHQ9 AHSP-201ENST00000302312 524 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.792e-10■■■■□ 26.4
DDX55Q8NHQ9 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC8.96□□□□□ -0.972e-10■■■■□ 26.4
DDX55Q8NHQ9 AHSP-202ENST00000564707 213 ntTSL 36.61□□□□□ -1.352e-10■■■■□ 26.4
DDX55Q8NHQ9 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC6.47□□□□□ -1.372e-10■■■■□ 26.4
DDX55Q8NHQ9 METRN-201ENST00000219542 915 ntAPPRIS ALT2 TSL 231.65■■■□□ 2.663e-6■■■■□ 26.4
DDX55Q8NHQ9 METRN-203ENST00000567076 523 ntAPPRIS ALT2 TSL 530.01■■■□□ 2.393e-6■■■■□ 26.4
DDX55Q8NHQ9 METRN-206ENST00000570132 503 ntTSL 324.98■■□□□ 1.593e-6■■■■□ 26.4
DDX55Q8NHQ9 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.783e-6■■■■□ 26.4
DDX55Q8NHQ9 DGCR2-202ENST00000389262 4814 ntTSL 1 (best)15.11■□□□□ 0.013e-6■■■■□ 26.3
DDX55Q8NHQ9 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.143e-6■■■■□ 26.3
DDX55Q8NHQ9 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC14□□□□□ -0.173e-6■■■■□ 26.3
DDX55Q8NHQ9 DGCR2-205ENST00000537045 4361 ntTSL 2 BASIC12.97□□□□□ -0.333e-6■■■■□ 26.3
DDX55Q8NHQ9 TPX2-202ENST00000340513 3605 ntTSL 1 (best) BASIC12.95□□□□□ -0.344e-8■■■■□ 26.2
DDX55Q8NHQ9 TPX2-201ENST00000300403 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.354e-8■■■■□ 26.2
DDX55Q8NHQ9 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC7.39□□□□□ -1.234e-8■■■■□ 26.2
DDX55Q8NHQ9 SEMA4C-205ENST00000474420 2625 ntTSL 219.66■□□□□ 0.742e-14■■■■□ 26
DDX55Q8NHQ9 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.342e-14■■■■□ 26
DDX55Q8NHQ9 SEMA4C-204ENST00000467747 3371 ntTSL 215.02■□□□□ -02e-14■■■■□ 26
DDX55Q8NHQ9 SEMA4C-206ENST00000482925 3776 ntTSL 214.2□□□□□ -0.142e-14■■■■□ 26
DDX55Q8NHQ9 DAD1-205ENST00000543337 501 ntTSL 3 BASIC20.39■□□□□ 0.859e-10■■■■□ 26
DDX55Q8NHQ9 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.219e-10■■■■□ 26
DDX55Q8NHQ9 DAD1-204ENST00000538631 441 ntTSL 2 BASIC12.26□□□□□ -0.459e-10■■■■□ 26
DDX55Q8NHQ9 DAD1-203ENST00000535847 591 ntTSL 211.18□□□□□ -0.629e-10■■■■□ 26
DDX55Q8NHQ9 DAD1-202ENST00000489532 339 ntTSL 33.64□□□□□ -1.839e-10■■■■□ 26
DDX55Q8NHQ9 PINK1-AS-201ENST00000451424 4443 ntTSL 2 BASIC9.8□□□□□ -0.845e-20■■■■□ 25.9
DDX55Q8NHQ9 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.362e-7■■■■□ 25.8
DDX55Q8NHQ9 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.222e-7■■■■□ 25.8
DDX55Q8NHQ9 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.42■□□□□ 0.222e-7■■■■□ 25.8
DDX55Q8NHQ9 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.31■□□□□ 0.22e-7■■■■□ 25.8
DDX55Q8NHQ9 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.78■□□□□ 0.122e-7■■■■□ 25.8
DDX55Q8NHQ9 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.78■□□□□ 0.122e-7■■■■□ 25.8
DDX55Q8NHQ9 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.73■□□□□ 0.112e-7■■■■□ 25.8
DDX55Q8NHQ9 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.62■□□□□ 0.092e-7■■■■□ 25.8
DDX55Q8NHQ9 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC14.99□□□□□ -0.012e-7■■■■□ 25.8
DDX55Q8NHQ9 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC14.86□□□□□ -0.032e-7■■■■□ 25.8
DDX55Q8NHQ9 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.371e-11■■■■□ 25.8
DDX55Q8NHQ9 PCNX3-202ENST00000439247 3104 ntTSL 1 (best)14.02□□□□□ -0.171e-11■■■■□ 25.8
DDX55Q8NHQ9 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.352e-8■■■■□ 25.8
DDX55Q8NHQ9 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.052e-8■■■■□ 25.8
DDX55Q8NHQ9 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.882e-8■■■■□ 25.8
DDX55Q8NHQ9 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.42e-8■■■■□ 25.8
DDX55Q8NHQ9 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC23.61■■□□□ 1.372e-8■■■■□ 25.8
DDX55Q8NHQ9 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.162e-8■■■■□ 25.8
DDX55Q8NHQ9 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.93e-6■■■■□ 25.7
DDX55Q8NHQ9 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.12■□□□□ 0.813e-6■■■■□ 25.7
DDX55Q8NHQ9 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.383e-6■■■■□ 25.7
Retrieved 100 of 15,504 protein–RNA pairs in 310.4 ms