Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AL117332.1-201ENST00000622628 974 ntBASIC30.31■■■□□ 2.44
BRCA1P38398 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
BRCA1P38398 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.31■■■□□ 2.44
BRCA1P38398 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
BRCA1P38398 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC30.3■■■□□ 2.44
BRCA1P38398 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC30.3■■■□□ 2.44
BRCA1P38398 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC30.3■■■□□ 2.44
BRCA1P38398 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC30.3■■■□□ 2.44
BRCA1P38398 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
BRCA1P38398 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
BRCA1P38398 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
BRCA1P38398 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC30.29■■■□□ 2.44
BRCA1P38398 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
BRCA1P38398 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC30.27■■■□□ 2.44
BRCA1P38398 KRT18P24-201ENST00000344739 1156 ntBASIC30.27■■■□□ 2.44
BRCA1P38398 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC30.27■■■□□ 2.44
BRCA1P38398 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC30.27■■■□□ 2.44
BRCA1P38398 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
BRCA1P38398 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
BRCA1P38398 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
BRCA1P38398 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
BRCA1P38398 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
BRCA1P38398 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
BRCA1P38398 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC30.26■■■□□ 2.43
BRCA1P38398 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
BRCA1P38398 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.43
BRCA1P38398 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC30.25■■■□□ 2.43
BRCA1P38398 RPP21-222ENST00000433076 577 ntTSL 2 BASIC30.25■■■□□ 2.43
BRCA1P38398 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
BRCA1P38398 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC30.25■■■□□ 2.43
BRCA1P38398 TSPY9P-201ENST00000440215 945 ntBASIC30.25■■■□□ 2.43
BRCA1P38398 TSPY11P-201ENST00000442607 1045 ntBASIC30.25■■■□□ 2.43
BRCA1P38398 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC30.25■■■□□ 2.43
BRCA1P38398 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC30.25■■■□□ 2.43
BRCA1P38398 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC30.25■■■□□ 2.43
BRCA1P38398 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
BRCA1P38398 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
BRCA1P38398 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
BRCA1P38398 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
BRCA1P38398 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
BRCA1P38398 ABCB10P3-201ENST00000561950 2166 ntBASIC30.24■■■□□ 2.43
BRCA1P38398 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
BRCA1P38398 MIR4466-201ENST00000606121 54 ntBASIC30.23■■■□□ 2.43
BRCA1P38398 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC30.23■■■□□ 2.43
BRCA1P38398 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
BRCA1P38398 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC30.23■■■□□ 2.43
BRCA1P38398 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
BRCA1P38398 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
BRCA1P38398 MIR4281-201ENST00000580852 62 ntBASIC30.22■■■□□ 2.43
BRCA1P38398 AL512631.2-201ENST00000604634 923 ntBASIC30.22■■■□□ 2.43
BRCA1P38398 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
BRCA1P38398 QDPR-206ENST00000508623 601 ntTSL 3 BASIC30.21■■■□□ 2.43
BRCA1P38398 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
BRCA1P38398 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC30.21■■■□□ 2.43
BRCA1P38398 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC30.21■■■□□ 2.43
BRCA1P38398 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC30.2■■■□□ 2.43
BRCA1P38398 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.43
BRCA1P38398 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
BRCA1P38398 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.2■■■□□ 2.42
BRCA1P38398 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC30.2■■■□□ 2.42
BRCA1P38398 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
BRCA1P38398 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC30.19■■■□□ 2.42
BRCA1P38398 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
BRCA1P38398 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC30.19■■■□□ 2.42
BRCA1P38398 AC092028.1-203ENST00000608262 953 ntBASIC30.19■■■□□ 2.42
BRCA1P38398 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
BRCA1P38398 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC30.18■■■□□ 2.42
BRCA1P38398 GUK1-205ENST00000366722 850 ntTSL 3 BASIC30.18■■■□□ 2.42
BRCA1P38398 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
BRCA1P38398 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
BRCA1P38398 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.17■■■□□ 2.42
BRCA1P38398 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
BRCA1P38398 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
BRCA1P38398 AC026271.2-201ENST00000428091 497 ntBASIC30.16■■■□□ 2.42
BRCA1P38398 AC096631.2-201ENST00000436136 790 ntBASIC30.16■■■□□ 2.42
BRCA1P38398 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
BRCA1P38398 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC30.16■■■□□ 2.42
BRCA1P38398 ZNRF2P3-201ENST00000424200 374 ntBASIC30.16■■■□□ 2.42
BRCA1P38398 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC30.16■■■□□ 2.42
BRCA1P38398 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.16■■■□□ 2.42
BRCA1P38398 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
BRCA1P38398 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
BRCA1P38398 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC30.15■■■□□ 2.42
BRCA1P38398 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC30.15■■■□□ 2.42
BRCA1P38398 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC30.15■■■□□ 2.42
BRCA1P38398 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC30.14■■■□□ 2.42
BRCA1P38398 MIR3621-201ENST00000580529 85 ntBASIC30.14■■■□□ 2.42
BRCA1P38398 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
BRCA1P38398 SENP5-202ENST00000419026 973 ntTSL 3 BASIC30.14■■■□□ 2.42
BRCA1P38398 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
BRCA1P38398 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
BRCA1P38398 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
BRCA1P38398 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC30.13■■■□□ 2.41
BRCA1P38398 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
BRCA1P38398 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
BRCA1P38398 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
BRCA1P38398 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
BRCA1P38398 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC30.12■■■□□ 2.41
BRCA1P38398 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC30.12■■■□□ 2.41
BRCA1P38398 MIR6724-1-201ENST00000616420 92 ntBASIC30.12■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms