Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 INTS4P1-201ENST00000438455 1935 ntBASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHA3Q9Y5H8 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 PMPCAP1-201ENST00000508114 1576 ntBASIC18■□□□□ 0.47
PCDHA3Q9Y5H8 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 AC116407.4-201ENST00000623319 1061 ntBASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHA3Q9Y5H8 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 KRT18P1-202ENST00000452408 1331 ntBASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 DOC2GP-204ENST00000639052 2548 ntBASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms