Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 AC124067.4-201ENST00000519691 2379 ntBASIC17.76■□□□□ 0.43
VPS28Q9UK41 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
VPS28Q9UK41 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS28Q9UK41 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS28Q9UK41 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 AL135999.2-201ENST00000622438 1686 ntBASIC17.75■□□□□ 0.43
VPS28Q9UK41 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS28Q9UK41 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS28Q9UK41 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS28Q9UK41 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS28Q9UK41 AL356488.2-201ENST00000602755 427 ntBASIC17.75■□□□□ 0.43
VPS28Q9UK41 AC004706.3-202ENST00000621574 984 ntBASIC17.75■□□□□ 0.43
VPS28Q9UK41 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS28Q9UK41 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS28Q9UK41 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS28Q9UK41 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
VPS28Q9UK41 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS28Q9UK41 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS28Q9UK41 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS28Q9UK41 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS28Q9UK41 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS28Q9UK41 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS28Q9UK41 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS28Q9UK41 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS28Q9UK41 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 LINC00982-205ENST00000420957 435 ntBASIC17.74■□□□□ 0.43
VPS28Q9UK41 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 KRT18P27-201ENST00000427733 1299 ntBASIC17.74■□□□□ 0.43
VPS28Q9UK41 AP000347.1-202ENST00000435868 847 ntBASIC17.74■□□□□ 0.43
VPS28Q9UK41 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS28Q9UK41 AC136632.2-201ENST00000512891 861 ntBASIC17.74■□□□□ 0.43
VPS28Q9UK41 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS28Q9UK41 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS28Q9UK41 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS28Q9UK41 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS28Q9UK41 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS28Q9UK41 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS28Q9UK41 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS28Q9UK41 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS28Q9UK41 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS28Q9UK41 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS28Q9UK41 ELK2BP-201ENST00000415014 1224 ntBASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms