Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 AC016396.2-201ENST00000562575 1417 ntBASIC17.63■□□□□ 0.41
TRIM56Q9BRZ2 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 IGHV3-41-201ENST00000613121 348 ntBASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM56Q9BRZ2 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 AC005332.1-201ENST00000577698 1310 ntBASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 RNF216P1-203ENST00000404404 2427 ntBASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 AL049757.1-201ENST00000616842 1596 ntBASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM56Q9BRZ2 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 KRT8P10-201ENST00000450021 1447 ntBASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 AC093525.9-201ENST00000624961 1746 ntBASIC17.6■□□□□ 0.41
TRIM56Q9BRZ2 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms