Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13AQ96RL7 AL020996.1-203ENST00000536896 2307 ntBASIC16.84■□□□□ 0.29
VPS13AQ96RL7 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS13AQ96RL7 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 ARL16-210ENST00000574938 751 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 AC008738.7-201ENST00000609744 511 ntBASIC16.83■□□□□ 0.28
VPS13AQ96RL7 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 AC073592.3-201ENST00000625118 1834 ntBASIC16.83■□□□□ 0.28
VPS13AQ96RL7 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13AQ96RL7 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 AP3S2-216ENST00000617003 1561 ntBASIC16.82■□□□□ 0.28
VPS13AQ96RL7 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 AL023806.1-201ENST00000603994 1649 ntBASIC16.82■□□□□ 0.28
VPS13AQ96RL7 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 SPDYE18-201ENST00000510091 1050 ntBASIC16.82■□□□□ 0.28
VPS13AQ96RL7 ZNF767P-206ENST00000513792 565 ntBASIC16.82■□□□□ 0.28
VPS13AQ96RL7 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VPS13AQ96RL7 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms