Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 AC105339.3-201ENST00000560043 636 ntBASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 MIR7706-201ENST00000613747 67 ntBASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
PTCHD1Q96NR3 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 AL645608.8-201ENST00000606034 2086 ntBASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 LINC00982-205ENST00000420957 435 ntBASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 AC092910.1-201ENST00000482027 1129 ntBASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 AC012640.2-201ENST00000561606 901 ntBASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 AC116407.3-201ENST00000623905 1129 ntBASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.27■□□□□ 0.2
PTCHD1Q96NR3 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTCHD1Q96NR3 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.27■□□□□ 0.19
PTCHD1Q96NR3 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PTCHD1Q96NR3 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PTCHD1Q96NR3 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PTCHD1Q96NR3 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.27■□□□□ 0.19
PTCHD1Q96NR3 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTCHD1Q96NR3 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
PTCHD1Q96NR3 AC012313.1-201ENST00000593393 3059 ntBASIC16.27■□□□□ 0.19
PTCHD1Q96NR3 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
PTCHD1Q96NR3 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PTCHD1Q96NR3 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PTCHD1Q96NR3 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 AL138688.1-201ENST00000624851 1594 ntBASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 AL590627.1-203ENST00000421194 1026 ntBASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 MIR1199-201ENST00000621445 119 ntBASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 AC004706.3-202ENST00000621574 984 ntBASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD1Q96NR3 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms