Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LRCH3Q96II8 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.57■□□□□ 0.56
LRCH3Q96II8 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LRCH3Q96II8 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LRCH3Q96II8 AC005332.8-201ENST00000622750 2735 ntBASIC18.56■□□□□ 0.56
LRCH3Q96II8 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LRCH3Q96II8 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LRCH3Q96II8 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 USB1-203ENST00000539737 1212 ntTSL 2 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LRCH3Q96II8 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LRCH3Q96II8 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LRCH3Q96II8 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LRCH3Q96II8 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
LRCH3Q96II8 KRT8P44-201ENST00000441609 1350 ntBASIC18.55■□□□□ 0.56
LRCH3Q96II8 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRCH3Q96II8 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRCH3Q96II8 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
LRCH3Q96II8 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.55■□□□□ 0.56
LRCH3Q96II8 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
LRCH3Q96II8 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.55■□□□□ 0.56
LRCH3Q96II8 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LRCH3Q96II8 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRCH3Q96II8 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRCH3Q96II8 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC18.55■□□□□ 0.56
LRCH3Q96II8 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRCH3Q96II8 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.55■□□□□ 0.56
LRCH3Q96II8 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
LRCH3Q96II8 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.55■□□□□ 0.56
LRCH3Q96II8 ALG1L8P-201ENST00000533887 760 ntBASIC18.55■□□□□ 0.56
LRCH3Q96II8 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LRCH3Q96II8 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.55■□□□□ 0.56
LRCH3Q96II8 AC106886.1-201ENST00000568660 600 ntBASIC18.55■□□□□ 0.56
LRCH3Q96II8 AC003101.2-201ENST00000612557 442 ntBASIC18.55■□□□□ 0.56
LRCH3Q96II8 AC244517.3-201ENST00000616254 1235 ntBASIC18.55■□□□□ 0.56
LRCH3Q96II8 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.55■□□□□ 0.56
LRCH3Q96II8 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.55■□□□□ 0.56
LRCH3Q96II8 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRCH3Q96II8 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRCH3Q96II8 LETM1P2-201ENST00000597330 2178 ntBASIC18.55■□□□□ 0.56
LRCH3Q96II8 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.55■□□□□ 0.56
LRCH3Q96II8 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRCH3Q96II8 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.55■□□□□ 0.56
LRCH3Q96II8 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LRCH3Q96II8 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 ELK2AP-201ENST00000392510 1007 ntBASIC18.54■□□□□ 0.56
LRCH3Q96II8 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 AC104794.3-201ENST00000566840 1248 ntBASIC18.54■□□□□ 0.56
LRCH3Q96II8 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 COQ4-205ENST00000609948 956 ntTSL 2 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 AL589935.2-201ENST00000616471 1231 ntBASIC18.54■□□□□ 0.56
LRCH3Q96II8 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRCH3Q96II8 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
LRCH3Q96II8 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
LRCH3Q96II8 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
LRCH3Q96II8 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms