Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC010460.3-201ENST00000511359 1579 ntBASIC5.35□□□□□ -1.55
SYNE1Q8NF91 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AC007967.2-201ENST00000432613 625 ntBASIC5.35□□□□□ -1.55
SYNE1Q8NF91 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 NKTR-203ENST00000442970 646 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AC092910.1-201ENST00000482027 1129 ntBASIC5.35□□□□□ -1.55
SYNE1Q8NF91 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AL024508.2-201ENST00000607749 1894 ntBASIC5.35□□□□□ -1.55
SYNE1Q8NF91 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 LBH-203ENST00000404397 543 ntTSL 4 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 ANO7L1-203ENST00000602586 1720 ntBASIC5.34□□□□□ -1.55
SYNE1Q8NF91 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms