Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 AD000864.1-201ENST00000624076 2295 ntBASIC19.71■□□□□ 0.75
SH3RF1Q7Z6J0 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 AL121761.2-201ENST00000598007 1648 ntBASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 MIR770-201ENST00000390219 98 ntBASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 AC007967.3-201ENST00000434308 558 ntBASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 AC018845.2-201ENST00000568326 409 ntBASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 AC002310.6-201ENST00000624451 1377 ntBASIC19.7■□□□□ 0.74
SH3RF1Q7Z6J0 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 AC136632.2-201ENST00000512891 861 ntBASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 AC006557.2-201ENST00000592985 1240 ntBASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 AL078644.1-201ENST00000609881 752 ntBASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 AL513190.1-201ENST00000621254 727 ntBASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 C20orf181-201ENST00000623918 480 ntBASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 PGM5P2-202ENST00000637225 1043 ntBASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.69■□□□□ 0.74
SH3RF1Q7Z6J0 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 PMPCAP1-201ENST00000508114 1576 ntBASIC19.68■□□□□ 0.74
SH3RF1Q7Z6J0 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms