Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP41Q3LFD5 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
USP41Q3LFD5 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
USP41Q3LFD5 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USP41Q3LFD5 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP41Q3LFD5 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.28■□□□□ 0.52
USP41Q3LFD5 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
USP41Q3LFD5 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.28■□□□□ 0.52
USP41Q3LFD5 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP41Q3LFD5 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.28■□□□□ 0.52
USP41Q3LFD5 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.28■□□□□ 0.52
USP41Q3LFD5 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
USP41Q3LFD5 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.28■□□□□ 0.52
USP41Q3LFD5 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP41Q3LFD5 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.28■□□□□ 0.52
USP41Q3LFD5 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP41Q3LFD5 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USP41Q3LFD5 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USP41Q3LFD5 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP41Q3LFD5 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP41Q3LFD5 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP41Q3LFD5 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP41Q3LFD5 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
USP41Q3LFD5 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP41Q3LFD5 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
USP41Q3LFD5 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP41Q3LFD5 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP41Q3LFD5 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP41Q3LFD5 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP41Q3LFD5 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP41Q3LFD5 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.27■□□□□ 0.52
USP41Q3LFD5 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP41Q3LFD5 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.27■□□□□ 0.52
USP41Q3LFD5 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.27■□□□□ 0.52
USP41Q3LFD5 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.27■□□□□ 0.52
USP41Q3LFD5 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USP41Q3LFD5 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.27■□□□□ 0.52
USP41Q3LFD5 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.27■□□□□ 0.52
USP41Q3LFD5 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USP41Q3LFD5 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
USP41Q3LFD5 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
USP41Q3LFD5 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
USP41Q3LFD5 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.27■□□□□ 0.51
USP41Q3LFD5 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
USP41Q3LFD5 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
USP41Q3LFD5 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.26■□□□□ 0.51
USP41Q3LFD5 LYSMD4-203ENST00000378904 2122 ntBASIC18.26■□□□□ 0.51
USP41Q3LFD5 AC006116.8-202ENST00000587620 1550 ntBASIC18.26■□□□□ 0.51
USP41Q3LFD5 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP41Q3LFD5 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP41Q3LFD5 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
USP41Q3LFD5 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP41Q3LFD5 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP41Q3LFD5 AL645939.2-201ENST00000427340 991 ntBASIC18.26■□□□□ 0.51
USP41Q3LFD5 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.26■□□□□ 0.51
USP41Q3LFD5 RFPL4AP1-201ENST00000530883 850 ntBASIC18.26■□□□□ 0.51
USP41Q3LFD5 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.26■□□□□ 0.51
USP41Q3LFD5 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
USP41Q3LFD5 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.26■□□□□ 0.51
USP41Q3LFD5 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.26■□□□□ 0.51
USP41Q3LFD5 REXO1L3P-201ENST00000622202 1288 ntBASIC18.26■□□□□ 0.51
USP41Q3LFD5 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.26■□□□□ 0.51
USP41Q3LFD5 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.26■□□□□ 0.51
USP41Q3LFD5 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.26■□□□□ 0.51
USP41Q3LFD5 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.26■□□□□ 0.51
USP41Q3LFD5 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP41Q3LFD5 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP41Q3LFD5 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP41Q3LFD5 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP41Q3LFD5 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USP41Q3LFD5 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.26■□□□□ 0.51
USP41Q3LFD5 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.26■□□□□ 0.51
USP41Q3LFD5 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USP41Q3LFD5 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USP41Q3LFD5 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USP41Q3LFD5 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USP41Q3LFD5 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.25■□□□□ 0.51
USP41Q3LFD5 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.25■□□□□ 0.51
USP41Q3LFD5 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
USP41Q3LFD5 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USP41Q3LFD5 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
USP41Q3LFD5 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
USP41Q3LFD5 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
USP41Q3LFD5 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
USP41Q3LFD5 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
USP41Q3LFD5 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
USP41Q3LFD5 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.25■□□□□ 0.51
USP41Q3LFD5 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
USP41Q3LFD5 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
USP41Q3LFD5 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.25■□□□□ 0.51
USP41Q3LFD5 SLC25A6P5-201ENST00000435663 894 ntBASIC18.25■□□□□ 0.51
USP41Q3LFD5 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
USP41Q3LFD5 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.25■□□□□ 0.51
USP41Q3LFD5 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.25■□□□□ 0.51
USP41Q3LFD5 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.25■□□□□ 0.51
USP41Q3LFD5 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.25■□□□□ 0.51
USP41Q3LFD5 AC112191.1-201ENST00000523689 701 ntBASIC18.25■□□□□ 0.51
USP41Q3LFD5 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.25■□□□□ 0.51
USP41Q3LFD5 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
USP41Q3LFD5 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms