Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
CKS1BP61024 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
CKS1BP61024 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 AC105917.1-201ENST00000506637 2539 ntBASIC12.15□□□□□ -0.46
CKS1BP61024 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC12.15□□□□□ -0.46
CKS1BP61024 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 KRT8P50-201ENST00000562022 1438 ntBASIC12.15□□□□□ -0.46
CKS1BP61024 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC12.15□□□□□ -0.46
CKS1BP61024 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 MIR149-201ENST00000384879 89 ntBASIC12.15□□□□□ -0.46
CKS1BP61024 AL023284.2-201ENST00000405850 579 ntBASIC12.15□□□□□ -0.46
CKS1BP61024 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC12.15□□□□□ -0.46
CKS1BP61024 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC12.15□□□□□ -0.46
CKS1BP61024 C1QBPP2-201ENST00000528754 825 ntBASIC12.15□□□□□ -0.46
CKS1BP61024 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
CKS1BP61024 RPS15-203ENST00000586096 570 ntTSL 2 BASIC12.15□□□□□ -0.46
CKS1BP61024 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC12.15□□□□□ -0.46
CKS1BP61024 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC12.15□□□□□ -0.46
CKS1BP61024 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
CKS1BP61024 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC12.15□□□□□ -0.46
CKS1BP61024 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC12.15□□□□□ -0.46
CKS1BP61024 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC12.15□□□□□ -0.46
CKS1BP61024 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC12.15□□□□□ -0.46
CKS1BP61024 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
CKS1BP61024 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC12.15□□□□□ -0.46
CKS1BP61024 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
CKS1BP61024 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CKS1BP61024 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.47
CKS1BP61024 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
CKS1BP61024 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
CKS1BP61024 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
CKS1BP61024 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
CKS1BP61024 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC12.14□□□□□ -0.47
CKS1BP61024 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC12.14□□□□□ -0.47
CKS1BP61024 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
CKS1BP61024 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
CKS1BP61024 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
CKS1BP61024 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
CKS1BP61024 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC12.14□□□□□ -0.47
CKS1BP61024 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC12.14□□□□□ -0.47
CKS1BP61024 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC12.14□□□□□ -0.47
CKS1BP61024 B3GAT3P1-201ENST00000471720 806 ntBASIC12.14□□□□□ -0.47
CKS1BP61024 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC12.14□□□□□ -0.47
CKS1BP61024 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC12.14□□□□□ -0.47
CKS1BP61024 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC12.14□□□□□ -0.47
CKS1BP61024 SLC25A1P4-201ENST00000567977 778 ntBASIC12.14□□□□□ -0.47
CKS1BP61024 AF186192.3-201ENST00000583427 947 ntBASIC12.14□□□□□ -0.47
CKS1BP61024 MIR3180-5-201ENST00000583743 153 ntBASIC12.14□□□□□ -0.47
CKS1BP61024 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 AC006058.3-201ENST00000606217 1069 ntBASIC12.14□□□□□ -0.47
CKS1BP61024 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC12.14□□□□□ -0.47
CKS1BP61024 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC12.14□□□□□ -0.47
CKS1BP61024 TBCB-214ENST00000629269 413 ntTSL 5 BASIC12.14□□□□□ -0.47
CKS1BP61024 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC12.14□□□□□ -0.47
CKS1BP61024 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CKS1BP61024 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC12.14□□□□□ -0.47
CKS1BP61024 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms