Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SCN4AP35499 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SCN4AP35499 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.08■□□□□ 0.81
SCN4AP35499 REXO1L6P-201ENST00000603433 1515 ntBASIC20.08■□□□□ 0.81
SCN4AP35499 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
SCN4AP35499 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC20.08■□□□□ 0.8
SCN4AP35499 AC007389.4-201ENST00000454674 793 ntBASIC20.08■□□□□ 0.8
SCN4AP35499 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.8
SCN4AP35499 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
SCN4AP35499 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC20.08■□□□□ 0.8
SCN4AP35499 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SCN4AP35499 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.07■□□□□ 0.8
SCN4AP35499 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.07■□□□□ 0.8
SCN4AP35499 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SCN4AP35499 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.07■□□□□ 0.8
SCN4AP35499 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SCN4AP35499 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.07■□□□□ 0.8
SCN4AP35499 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SCN4AP35499 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SCN4AP35499 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SCN4AP35499 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SCN4AP35499 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SCN4AP35499 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SCN4AP35499 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.07■□□□□ 0.8
SCN4AP35499 AC008735.3-201ENST00000596646 500 ntBASIC20.07■□□□□ 0.8
SCN4AP35499 RN7SL828P-201ENST00000607615 303 ntBASIC20.07■□□□□ 0.8
SCN4AP35499 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.07■□□□□ 0.8
SCN4AP35499 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.07■□□□□ 0.8
SCN4AP35499 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SCN4AP35499 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SCN4AP35499 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.07■□□□□ 0.8
SCN4AP35499 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
SCN4AP35499 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SCN4AP35499 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.07■□□□□ 0.8
SCN4AP35499 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SCN4AP35499 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SCN4AP35499 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC20.07■□□□□ 0.8
SCN4AP35499 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.07■□□□□ 0.8
SCN4AP35499 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SCN4AP35499 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC20.06■□□□□ 0.8
SCN4AP35499 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC20.06■□□□□ 0.8
SCN4AP35499 GNAQP1-201ENST00000444815 1067 ntBASIC20.06■□□□□ 0.8
SCN4AP35499 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SCN4AP35499 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC20.06■□□□□ 0.8
SCN4AP35499 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC20.06■□□□□ 0.8
SCN4AP35499 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC20.06■□□□□ 0.8
SCN4AP35499 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
SCN4AP35499 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC20.06■□□□□ 0.8
SCN4AP35499 AL589739.1-201ENST00000607720 493 ntBASIC20.06■□□□□ 0.8
SCN4AP35499 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
SCN4AP35499 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.06■□□□□ 0.8
SCN4AP35499 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.06■□□□□ 0.8
SCN4AP35499 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SCN4AP35499 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC20.06■□□□□ 0.8
SCN4AP35499 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC20.06■□□□□ 0.8
SCN4AP35499 KRT18P55-202ENST00000578578 1546 ntBASIC20.06■□□□□ 0.8
SCN4AP35499 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SCN4AP35499 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SCN4AP35499 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.06■□□□□ 0.8
SCN4AP35499 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC20.06■□□□□ 0.8
SCN4AP35499 SPDYE18-201ENST00000510091 1050 ntBASIC20.06■□□□□ 0.8
SCN4AP35499 FUZ-207ENST00000526575 482 ntTSL 4 BASIC20.06■□□□□ 0.8
SCN4AP35499 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.06■□□□□ 0.8
SCN4AP35499 AL512343.1-201ENST00000605837 169 ntBASIC20.06■□□□□ 0.8
SCN4AP35499 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.06■□□□□ 0.8
SCN4AP35499 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC20.06■□□□□ 0.8
SCN4AP35499 AC131009.4-201ENST00000624048 1740 ntBASIC20.06■□□□□ 0.8
SCN4AP35499 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC20.06■□□□□ 0.8
SCN4AP35499 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
SCN4AP35499 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SCN4AP35499 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SCN4AP35499 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC20.05■□□□□ 0.8
SCN4AP35499 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SCN4AP35499 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.05■□□□□ 0.8
SCN4AP35499 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN4AP35499 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.05■□□□□ 0.8
SCN4AP35499 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN4AP35499 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
SCN4AP35499 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SCN4AP35499 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SCN4AP35499 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC20.05■□□□□ 0.8
SCN4AP35499 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SCN4AP35499 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SCN4AP35499 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN4AP35499 STARD13-205ENST00000439831 945 ntTSL 2 BASIC20.05■□□□□ 0.8
SCN4AP35499 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms