Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.23■□□□□ 0.35
XRCC1P18887 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.23■□□□□ 0.35
XRCC1P18887 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.23■□□□□ 0.35
XRCC1P18887 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 PCDHB19P-201ENST00000570871 2371 ntBASIC17.23■□□□□ 0.35
XRCC1P18887 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.23■□□□□ 0.35
XRCC1P18887 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.23■□□□□ 0.35
XRCC1P18887 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.23■□□□□ 0.35
XRCC1P18887 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
XRCC1P18887 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
XRCC1P18887 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.23■□□□□ 0.35
XRCC1P18887 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
XRCC1P18887 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.23■□□□□ 0.35
XRCC1P18887 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.23■□□□□ 0.35
XRCC1P18887 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.23■□□□□ 0.35
XRCC1P18887 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 AC133963.1-201ENST00000504166 1679 ntBASIC17.23■□□□□ 0.35
XRCC1P18887 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
XRCC1P18887 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
XRCC1P18887 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.23■□□□□ 0.35
XRCC1P18887 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.22■□□□□ 0.35
XRCC1P18887 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.22■□□□□ 0.35
XRCC1P18887 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.22■□□□□ 0.35
XRCC1P18887 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.22■□□□□ 0.35
XRCC1P18887 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
XRCC1P18887 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.22■□□□□ 0.35
XRCC1P18887 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
XRCC1P18887 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.22■□□□□ 0.35
XRCC1P18887 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.22■□□□□ 0.35
XRCC1P18887 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 KRT18P67-201ENST00000432816 1264 ntBASIC17.22■□□□□ 0.35
XRCC1P18887 DDX43P3-201ENST00000441064 443 ntBASIC17.22■□□□□ 0.35
XRCC1P18887 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
XRCC1P18887 AF186996.4-201ENST00000467186 377 ntBASIC17.22■□□□□ 0.35
XRCC1P18887 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.22■□□□□ 0.35
XRCC1P18887 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.22■□□□□ 0.35
XRCC1P18887 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.22■□□□□ 0.35
XRCC1P18887 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 AD001527.2-201ENST00000622994 785 ntBASIC17.22■□□□□ 0.35
XRCC1P18887 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
XRCC1P18887 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
XRCC1P18887 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.22■□□□□ 0.35
XRCC1P18887 AC100803.2-201ENST00000562459 1963 ntBASIC17.22■□□□□ 0.35
XRCC1P18887 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.22■□□□□ 0.35
XRCC1P18887 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
XRCC1P18887 PCDH8P1-201ENST00000428983 2773 ntBASIC17.22■□□□□ 0.35
XRCC1P18887 HLA-A-201ENST00000376802 1334 ntBASIC17.21■□□□□ 0.35
XRCC1P18887 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.21■□□□□ 0.35
XRCC1P18887 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
XRCC1P18887 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
XRCC1P18887 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.21■□□□□ 0.35
XRCC1P18887 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.21■□□□□ 0.35
XRCC1P18887 PMPCAP1-201ENST00000508114 1576 ntBASIC17.21■□□□□ 0.35
XRCC1P18887 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
XRCC1P18887 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.21■□□□□ 0.35
XRCC1P18887 RNPS1P1-201ENST00000507437 918 ntBASIC17.21■□□□□ 0.35
XRCC1P18887 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms