Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
VPS4BO75351 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
VPS4BO75351 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 MYCLP1-201ENST00000372451 1075 ntBASIC16.94■□□□□ 0.3
VPS4BO75351 IGHGP-201ENST00000390555 1178 ntBASIC16.94■□□□□ 0.3
VPS4BO75351 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VPS4BO75351 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS4BO75351 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS4BO75351 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 AL353801.3-201ENST00000609898 542 ntBASIC16.94■□□□□ 0.3
VPS4BO75351 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS4BO75351 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VPS4BO75351 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
VPS4BO75351 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS4BO75351 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS4BO75351 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS4BO75351 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS4BO75351 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
VPS4BO75351 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS4BO75351 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
VPS4BO75351 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.93■□□□□ 0.3
VPS4BO75351 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
VPS4BO75351 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.93■□□□□ 0.3
VPS4BO75351 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 MIR662-201ENST00000384847 95 ntBASIC16.93■□□□□ 0.3
VPS4BO75351 MRPL3P1-201ENST00000400109 1033 ntBASIC16.93■□□□□ 0.3
VPS4BO75351 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS4BO75351 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS4BO75351 AC074051.2-201ENST00000565115 352 ntBASIC16.93■□□□□ 0.3
VPS4BO75351 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VPS4BO75351 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS4BO75351 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VPS4BO75351 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
VPS4BO75351 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
VPS4BO75351 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 AC097374.2-201ENST00000618617 1306 ntBASIC16.93■□□□□ 0.3
VPS4BO75351 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.93■□□□□ 0.3
VPS4BO75351 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS4BO75351 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS4BO75351 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VPS4BO75351 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
VPS4BO75351 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS4BO75351 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VPS4BO75351 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS4BO75351 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS4BO75351 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS4BO75351 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS4BO75351 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS4BO75351 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS4BO75351 AP003733.1-201ENST00000491725 852 ntBASIC16.92■□□□□ 0.3
VPS4BO75351 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms