Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.06■□□□□ 0.16
PRKNO60260 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
PRKNO60260 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.06■□□□□ 0.16
PRKNO60260 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
PRKNO60260 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.06■□□□□ 0.16
PRKNO60260 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.06■□□□□ 0.16
PRKNO60260 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.06■□□□□ 0.16
PRKNO60260 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.06■□□□□ 0.16
PRKNO60260 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.06■□□□□ 0.16
PRKNO60260 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.06■□□□□ 0.16
PRKNO60260 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.06■□□□□ 0.16
PRKNO60260 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.06■□□□□ 0.16
PRKNO60260 AC006557.2-201ENST00000592985 1240 ntBASIC16.06■□□□□ 0.16
PRKNO60260 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 AL356488.2-201ENST00000602755 427 ntBASIC16.06■□□□□ 0.16
PRKNO60260 AL139424.1-201ENST00000607572 797 ntBASIC16.06■□□□□ 0.16
PRKNO60260 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PRKNO60260 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.06■□□□□ 0.16
PRKNO60260 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.06■□□□□ 0.16
PRKNO60260 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PRKNO60260 OR6D1P-202ENST00000641007 5290 ntBASIC16.05■□□□□ 0.16
PRKNO60260 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PRKNO60260 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRKNO60260 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRKNO60260 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PRKNO60260 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRKNO60260 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PRKNO60260 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRKNO60260 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
PRKNO60260 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.05■□□□□ 0.16
PRKNO60260 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.05■□□□□ 0.16
PRKNO60260 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.05■□□□□ 0.16
PRKNO60260 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.05■□□□□ 0.16
PRKNO60260 RPL13AP23-201ENST00000480739 586 ntBASIC16.05■□□□□ 0.16
PRKNO60260 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.05■□□□□ 0.16
PRKNO60260 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
PRKNO60260 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRKNO60260 AL671883.3-201ENST00000603274 991 ntBASIC16.05■□□□□ 0.16
PRKNO60260 AL353135.1-201ENST00000606729 504 ntBASIC16.05■□□□□ 0.16
PRKNO60260 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.05■□□□□ 0.16
PRKNO60260 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.05■□□□□ 0.16
PRKNO60260 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PRKNO60260 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PRKNO60260 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRKNO60260 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRKNO60260 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PRKNO60260 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PRKNO60260 AC080080.1-201ENST00000625121 2420 ntBASIC16.05■□□□□ 0.16
PRKNO60260 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PRKNO60260 AL138688.1-201ENST00000624851 1594 ntBASIC16.04■□□□□ 0.16
PRKNO60260 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.04■□□□□ 0.16
PRKNO60260 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKNO60260 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PRKNO60260 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
PRKNO60260 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
PRKNO60260 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
PRKNO60260 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKNO60260 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.04■□□□□ 0.16
PRKNO60260 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.04■□□□□ 0.16
PRKNO60260 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PRKNO60260 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.04■□□□□ 0.16
PRKNO60260 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKNO60260 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKNO60260 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.04■□□□□ 0.16
PRKNO60260 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.04■□□□□ 0.16
PRKNO60260 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.04■□□□□ 0.16
PRKNO60260 RNA5SP415-201ENST00000517246 115 ntBASIC16.04■□□□□ 0.16
PRKNO60260 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.04■□□□□ 0.16
PRKNO60260 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.04■□□□□ 0.16
PRKNO60260 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.04■□□□□ 0.16
PRKNO60260 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKNO60260 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.04■□□□□ 0.16
PRKNO60260 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
PRKNO60260 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PRKNO60260 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PRKNO60260 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.04■□□□□ 0.16
PRKNO60260 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.04■□□□□ 0.16
PRKNO60260 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKNO60260 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PRKNO60260 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKNO60260 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKNO60260 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PRKNO60260 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKNO60260 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PRKNO60260 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.03■□□□□ 0.16
PRKNO60260 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PRKNO60260 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms