Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 RCN1P2-201ENST00000398357 915 ntBASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 AP002414.4-201ENST00000589764 1148 ntBASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 GPR89P-201ENST00000407924 1495 ntBASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LIMCH1Q9UPQ0 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 NSUN5P1-202ENST00000421140 1535 ntBASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 NSUN5P2-203ENST00000457352 1529 ntBASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 IGHV3-47-201ENST00000425060 335 ntBASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 TOB2P1-201ENST00000469761 992 ntBASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIMCH1Q9UPQ0 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIMCH1Q9UPQ0 TNRC18P3-201ENST00000441896 2691 ntBASIC20.33■□□□□ 0.84
LIMCH1Q9UPQ0 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIMCH1Q9UPQ0 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LIMCH1Q9UPQ0 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
LIMCH1Q9UPQ0 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIMCH1Q9UPQ0 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
LIMCH1Q9UPQ0 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIMCH1Q9UPQ0 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC20.33■□□□□ 0.84
LIMCH1Q9UPQ0 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 AC096582.2-201ENST00000510860 516 ntBASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 IER3-202ENST00000376377 1350 ntBASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMCH1Q9UPQ0 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 PCDHB19P-201ENST00000570871 2371 ntBASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 FAM210CP-201ENST00000445714 574 ntBASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMCH1Q9UPQ0 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms