Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 AC073592.5-201ENST00000624854 528 ntBASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 AC006449.5-201ENST00000610658 2098 ntBASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.86■□□□□ 0.61
LIMA1Q9UHB6 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 PCDH8P1-201ENST00000428983 2773 ntBASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
LIMA1Q9UHB6 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 RCN1P1-201ENST00000400413 996 ntBASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 RN7SL850P-201ENST00000579959 291 ntBASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMA1Q9UHB6 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMA1Q9UHB6 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 CHCHD2P8-201ENST00000429873 447 ntBASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 AL645728.1-201ENST00000366221 2101 ntBASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMA1Q9UHB6 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms