Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMD1Q9UGP4 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMD1Q9UGP4 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIMD1Q9UGP4 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.98■□□□□ 0.47
LIMD1Q9UGP4 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
LIMD1Q9UGP4 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMD1Q9UGP4 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.98■□□□□ 0.47
LIMD1Q9UGP4 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 AC009336.1-201ENST00000608941 1553 ntBASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 FAM185BP-201ENST00000443595 716 ntBASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 AL513480.1-201ENST00000451731 511 ntBASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 TIMM8BP1-201ENST00000452384 211 ntBASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.97■□□□□ 0.47
LIMD1Q9UGP4 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 PCDHB18P-201ENST00000524813 2368 ntBASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 PMS2P4-201ENST00000412466 1052 ntBASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 AC112191.1-201ENST00000523689 701 ntBASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMD1Q9UGP4 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms