Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.2■□□□□ 0.66
VTA1Q9NP79 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VTA1Q9NP79 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VTA1Q9NP79 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
VTA1Q9NP79 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.2■□□□□ 0.66
VTA1Q9NP79 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
VTA1Q9NP79 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
VTA1Q9NP79 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VTA1Q9NP79 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VTA1Q9NP79 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VTA1Q9NP79 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VTA1Q9NP79 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.19■□□□□ 0.66
VTA1Q9NP79 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VTA1Q9NP79 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC19.19■□□□□ 0.66
VTA1Q9NP79 AC005237.2-201ENST00000434368 219 ntBASIC19.19■□□□□ 0.66
VTA1Q9NP79 AL592309.1-201ENST00000443127 649 ntBASIC19.19■□□□□ 0.66
VTA1Q9NP79 AC079140.1-201ENST00000508039 487 ntBASIC19.19■□□□□ 0.66
VTA1Q9NP79 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC19.19■□□□□ 0.66
VTA1Q9NP79 SPCS2P1-201ENST00000561636 679 ntBASIC19.19■□□□□ 0.66
VTA1Q9NP79 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.19■□□□□ 0.66
VTA1Q9NP79 AC015911.4-201ENST00000588022 1070 ntBASIC19.19■□□□□ 0.66
VTA1Q9NP79 AL161645.1-201ENST00000622716 1255 ntBASIC19.19■□□□□ 0.66
VTA1Q9NP79 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VTA1Q9NP79 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.19■□□□□ 0.66
VTA1Q9NP79 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VTA1Q9NP79 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VTA1Q9NP79 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.19■□□□□ 0.66
VTA1Q9NP79 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.19■□□□□ 0.66
VTA1Q9NP79 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
VTA1Q9NP79 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VTA1Q9NP79 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
VTA1Q9NP79 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VTA1Q9NP79 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
VTA1Q9NP79 AC135050.7-201ENST00000624508 2218 ntBASIC19.19■□□□□ 0.66
VTA1Q9NP79 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
VTA1Q9NP79 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VTA1Q9NP79 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
VTA1Q9NP79 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VTA1Q9NP79 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VTA1Q9NP79 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VTA1Q9NP79 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VTA1Q9NP79 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VTA1Q9NP79 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 AL135744.1-201ENST00000565098 629 ntBASIC19.18■□□□□ 0.66
VTA1Q9NP79 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 AC012569.1-201ENST00000591191 1524 ntBASIC19.18■□□□□ 0.66
VTA1Q9NP79 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VTA1Q9NP79 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VTA1Q9NP79 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VTA1Q9NP79 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
VTA1Q9NP79 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VTA1Q9NP79 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
VTA1Q9NP79 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 FAM86GP-201ENST00000448322 971 ntBASIC19.17■□□□□ 0.66
VTA1Q9NP79 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC19.17■□□□□ 0.66
VTA1Q9NP79 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 TSFM-210ENST00000550559 897 ntTSL 5 BASIC19.17■□□□□ 0.66
VTA1Q9NP79 AC243562.1-201ENST00000560672 389 ntBASIC19.17■□□□□ 0.66
VTA1Q9NP79 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.17■□□□□ 0.66
VTA1Q9NP79 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC19.17■□□□□ 0.66
VTA1Q9NP79 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC19.17■□□□□ 0.66
VTA1Q9NP79 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.17■□□□□ 0.66
VTA1Q9NP79 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VTA1Q9NP79 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.17■□□□□ 0.66
VTA1Q9NP79 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VTA1Q9NP79 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms