Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 MED29-202ENST00000594368 1471 ntTSL 2 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CHMP1AQ9HD42 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 KRT18P22-201ENST00000402024 1347 ntBASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 AGGF1P2-201ENST00000426656 2106 ntBASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 TMA16-209ENST00000513272 803 ntTSL 2 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 GCSHP2-201ENST00000560971 527 ntBASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 AC141257.4-201ENST00000634557 245 ntBASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 AC136944.6-201ENST00000634818 245 ntBASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.92□□□□□ -0.02
CHMP1AQ9HD42 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CHMP1AQ9HD42 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms