Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 AP002414.1-201ENST00000391405 1147 ntBASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 UNC93B7-201ENST00000509439 705 ntBASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 DUX4L17-201ENST00000557360 1267 ntBASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 LINC01711-201ENST00000598340 967 ntBASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 IFNL4P1-201ENST00000607083 540 ntBASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCSER1Q9C0I3 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 AL139424.1-201ENST00000607572 797 ntBASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCSER1Q9C0I3 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 AC011676.5-201ENST00000624864 2660 ntBASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 MTDHP4-201ENST00000600287 670 ntBASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.27■□□□□ 0.68
CCSER1Q9C0I3 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.27■□□□□ 0.67
CCSER1Q9C0I3 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCSER1Q9C0I3 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCSER1Q9C0I3 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCSER1Q9C0I3 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.27■□□□□ 0.67
CCSER1Q9C0I3 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 AGGF1P2-201ENST00000426656 2106 ntBASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 SCARNA2-201ENST00000458748 420 ntBASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.26■□□□□ 0.67
CCSER1Q9C0I3 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms