Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 AC092068.3-201ENST00000587894 2016 ntBASIC15.12■□□□□ 0.01
NKX3-1Q99801 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 AC132872.4-202ENST00000622924 2756 ntBASIC15.12■□□□□ 0.01
NKX3-1Q99801 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX3-1Q99801 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.12■□□□□ 0.01
NKX3-1Q99801 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 LINC01311-201ENST00000565162 1445 ntBASIC15.11■□□□□ 0.01
NKX3-1Q99801 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 AC046158.3-201ENST00000624947 2558 ntBASIC15.11■□□□□ 0.01
NKX3-1Q99801 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 ANKRD20A18P-201ENST00000359341 492 ntBASIC15.11■□□□□ 0.01
NKX3-1Q99801 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 SLC25A1P3-201ENST00000395415 828 ntBASIC15.11■□□□□ 0.01
NKX3-1Q99801 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 AC006011.2-201ENST00000621313 1158 ntBASIC15.11■□□□□ 0.01
NKX3-1Q99801 AC011558.1-201ENST00000623459 338 ntBASIC15.11■□□□□ 0.01
NKX3-1Q99801 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 HYMAI-201ENST00000635591 3347 ntBASIC15.11■□□□□ 0.01
NKX3-1Q99801 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
NKX3-1Q99801 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX3-1Q99801 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 KRT89P-201ENST00000620027 1478 ntBASIC15.1■□□□□ 0.01
NKX3-1Q99801 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
NKX3-1Q99801 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX3-1Q99801 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms